Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0327
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         44   8e-05
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               41   7e-04
SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 18/36 (50%), Positives = 28/36 (77%)
 Frame = +1

Query: 139 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGAS 246
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGAS 36



 Score = 35.5 bits (78), Expect = 0.028
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 246 IFXICIYLHIGRGIYYESFN 305
           +F IC+Y HIGRG+YY S++
Sbjct: 37  MFFICLYAHIGRGLYYGSYS 56


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 372 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAGDNATLTDFNTFH 527
           Y LP  QI +W   ++T +  AIP +G+ LV  + G  +   +TLT F + H
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLH 115


>SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 305 LKICMINWNYNFIYTNSNCXHRXCLTLRSNIFLG 406
           LKI M+N+ Y FI+    C     L LRSN+  G
Sbjct: 110 LKILMVNYRYKFIFIVKECKVMTDL-LRSNVDSG 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,730
Number of Sequences: 59808
Number of extensions: 204423
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)