Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0324
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.33 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.33 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.33 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.44 
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   2.4  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   9.5  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   9.5  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.5  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 366 RVHTMSLPRASAPPGLRPKRDYRXVPRHQ 452
           +VH       +  PG+ PKR      RHQ
Sbjct: 216 KVHVAGASNGTFAPGMEPKRQRTAYTRHQ 244


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 366 RVHTMSLPRASAPPGLRPKRDYRXVPRHQ 452
           +VH       +  PG+ PKR      RHQ
Sbjct: 216 KVHVAGASNGTFAPGMEPKRQRTAYTRHQ 244


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 366 RVHTMSLPRASAPPGLRPKRDYRXVPRHQ 452
           +VH       +  PG+ PKR      RHQ
Sbjct: 216 KVHVAGASNGTFAPGMEPKRQRTAYTRHQ 244


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 320 DVRFDVLDHYTHYRVRRVLVISFRCSKKNSSSCASLPLTEARTRLMRSMYFPTQ 159
           +V F+ L ++      R+L + F    +   S  S+P T  R  LM S  FP +
Sbjct: 304 NVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEE 357


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 90  RARPLLLQNRTKLILHGNTIQ 28
           R +  L QNR + + HG T+Q
Sbjct: 163 RLKAQLWQNRYETVAHGMTVQ 183


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 71  FRTELSSFFTVTPYSLYGA 15
           FR    S FT+  YSL+ A
Sbjct: 223 FRVAFPSVFTLIDYSLWKA 241


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory
          receptor candidate 15 protein.
          Length = 455

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 59 LSSFFTVTPYSLYGA*TLL 3
          ++ FF +TP S+Y   T L
Sbjct: 12 VAKFFAITPSSIYDKPTKL 30


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 323 VDVRFDVLDHYTHYRVRR 270
           V +  DV++H+ H+   R
Sbjct: 474 VKILLDVINHFPHFTAAR 491


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,988
Number of Sequences: 336
Number of extensions: 1783
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)