Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0324
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    33   0.15 
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771...    30   1.4  
07_02_0006 - 11663297-11663308,11663587-11663783,11663860-116639...    28   4.4  
05_03_0628 - 16367841-16369259                                         28   5.8  
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536...    27   7.6  
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084...    27   7.6  

>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 206 SEEDWHKTRNSF*SIGKRSPGRGELYNGYSGREHRTSHPLEAAADRR 346
           S ++W   R SF     R  GRG ++  Y GR+ R   P    A RR
Sbjct: 120 SMQEWSSERCSFVQEALRGSGRGHIWAFYRGRQRRLGPPPPLPARRR 166


>03_05_0586 -
           25875703-25876332,25876426-25876713,25877064-25877194,
           25877299-25877812
          Length = 520

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
 Frame = +3

Query: 174 HGPHQPRPSFGQRKTG------------TRRGILFRASERDHQDAANSIMGIVVENI 308
           HGPH P P FG+   G             R G L+ A  R   D A   + + V NI
Sbjct: 253 HGPHWPLPPFGESSRGPFNILEQRPRFANRHGRLYEADARSFHDLAEHDIRVAVVNI 309


>07_02_0006 -
           11663297-11663308,11663587-11663783,11663860-11663948,
           11664087-11664166,11664747-11664851,11664951-11665031,
           11665135-11665218,11665352-11665449,11666203-11666297,
           11666380-11666453,11666549-11666826,11666920-11667190
          Length = 487

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = +2

Query: 305 HRTSHPLEAAADRRNPQVRRQGPHDVSAQSFCSARTTPQTRLSXSSTSPILMSD*RLRAX 484
           +++  PL       NP  RR+    VS++  C + +          T+P L++   +RA 
Sbjct: 8   YQSMEPLHFPLLSPNPDTRRRVRKAVSSKERCRSESGDMAAALLPETAPRLLTPETIRAA 67

Query: 485 CDQAN*KAGETGAVLNLKRAINXF 556
             Q+    G     L+L+RAI  +
Sbjct: 68  AKQSQ---GIQLVPLSLRRAIKRY 88


>05_03_0628 - 16367841-16369259
          Length = 472

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 326 EAAADRRNPQVRRQGPHDVSAQSFCSARTTPQTRLSXSSTSPI 454
           E  A RR  +VRRQ P    +  F + R TP +  S  +T P+
Sbjct: 44  EVMATRRIVKVRRQQPSSAPSNPFSAIRFTP-SDTSAQATIPV 85


>11_06_0013 -
           19252779-19252805,19252947-19253090,19253572-19253663,
           19253757-19253835,19253965-19254031,19254163-19254254,
           19254986-19255102,19255254-19255365,19255479-19255594,
           19255680-19255756,19255912-19255993,19256077-19256214,
           19258806-19259009
          Length = 448

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 296 GREHRTSHPLEAAADRRNPQVRRQGPHDVSAQSFCSARTTPQTRLS 433
           G +H  +HP+    ++ +    R GP   +A S+C A   P+  LS
Sbjct: 268 GIQHLYAHPVYLKTEQCSMASPRNGPLPPNAPSWCEAPFDPEGLLS 313


>04_04_1536 -
           34207425-34207490,34207801-34208268,34208345-34208485,
           34208582-34208820,34209950-34210436
          Length = 466

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 404 RSRSSGQRHRVDPVSVLEDSVD 339
           RSR++G+R+R D V  L +SVD
Sbjct: 125 RSRAAGERYRHDGVEELPESVD 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,762
Number of Sequences: 37544
Number of extensions: 220227
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)