Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0324
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   31   0.48 
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_40525| Best HMM Match : Integrase_Zn (HMM E-Value=0.099)            31   0.84 
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   0.84 
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)                   30   1.5  
SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)                     30   1.5  
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.5  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     29   1.9  
SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)        29   1.9  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              28   4.5  
SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_947| Best HMM Match : Phage_term_smal (HMM E-Value=2.8)             28   4.5  
SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)                     28   5.9  
SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)         28   5.9  
SB_51743| Best HMM Match : DPRP (HMM E-Value=0.4)                      28   5.9  
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 28   5.9  
SB_1692| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 153 RLLRGEVHGPHQPRPSFGQRKT---GTRRGILFRASERDHQDAANSIMGIVVENIE 311
           R  RGEVH P +P  + G R+T   G  RG   R   R+  DA     GI  +N+E
Sbjct: 627 RCPRGEVHHPARPFSADGPRRTVPKGALRGDALRDHARNGSDATKLSYGI--KNLE 680


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 342  DGILKYGDRVHTMSLPRASAPPGLRPKRDY 431
            DG+L+ G R+H   +   +  P L PK+DY
Sbjct: 956  DGLLRCGGRIHNAPVSETAKFPVLLPKKDY 985


>SB_40525| Best HMM Match : Integrase_Zn (HMM E-Value=0.099)
          Length = 263

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 DGILKYGDRVHTMSLPRASAPPGLRPKRDY 431
           DG+L+ G R+H   +   +  P L PK+DY
Sbjct: 86  DGLLRCGGRIHNAPVSETAKFPVLLPKKDY 115


>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1378

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 342  DGILKYGDRVHTMSLPRASAPPGLRPKRDY 431
            DG+L+ G R+H   +   +  P L PK+DY
Sbjct: 1027 DGLLRCGGRIHNAPVSETAKFPVLLPKKDY 1056


>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
          Length = 718

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +3

Query: 225 RRGILFRASERDHQDAANSIMGIVVENIE-PHIHWKPQLIDGILKYGDRVHTMSLPRASA 401
           RRG +    +++ Q+      G++  ++  P    + +L   +++Y       ++P  S 
Sbjct: 564 RRGDILHVVDQEDQNWWQGDSGLITCSVTGPPKIGRKELRQRLIQYDPDRFAGAIPHTSR 623

Query: 402 P--PGLRPKRDYRXVPRHQF 455
           P  PG     DY  VPRH F
Sbjct: 624 PIKPGEINDHDYHFVPRHTF 643


>SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)
          Length = 177

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 162 RGEVHGPHQPRPSFGQRKTGTRRGILFRASERDH 263
           RGEVH P +P  + G R+T   +G L  A+ RDH
Sbjct: 141 RGEVHHPARPFSADGPRRT-VPKGALRGAALRDH 173


>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 342  DGILKYGDRVHTMSLPRASAPPGLRPKRDY 431
            DG+L+ G R+H   +   +  P L PK+DY
Sbjct: 1503 DGLLRCGGRIHNAPVSENAKFPVLLPKKDY 1532


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 293  SGREHRTSHPLEAAADRRNPQVRRQGPHD 379
            SG+   TSHPL +   + + Q++RQ  HD
Sbjct: 1862 SGQVCNTSHPLHSLQAKFDEQIKRQADHD 1890


>SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)
          Length = 1423

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 293 SGREHRTSHPLEAAADRRNPQVRRQGPHD 379
           SG+   TSHPL +   + + Q++RQ  HD
Sbjct: 250 SGQVCNTSHPLHSLQAKFDEQIKRQADHD 278


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +2

Query: 254 KRSPGRGELYNGYSGREHRTSHPLEAAADRRNPQVRRQGPHDVSAQSFCSARTTPQTRLS 433
           K SPG G  Y+ YS  +    +  +    +   Q   QGP   +A+ + S    PQ    
Sbjct: 658 KASPGFG-WYDEYSRPQPAQQYSSQGLPPQAPQQYSWQGPPPQAAKQYYSQEPPPQAAQQ 716

Query: 434 XSSTSP 451
            SS  P
Sbjct: 717 YSSQGP 722


>SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 162 RGEVHGPHQPRPSFGQRKTGTRRGILFRASERDH 263
           RGEVH P +P  + G R+    +G L  A+ RDH
Sbjct: 229 RGEVHHPARPFSADGPRR-AIHKGALRGAALRDH 261


>SB_947| Best HMM Match : Phage_term_smal (HMM E-Value=2.8)
          Length = 237

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 330 PQLIDGILKYGDRVHTMSLP 389
           PQL+DG+L+ G R+    LP
Sbjct: 124 PQLVDGVLRVGGRIDKADLP 143


>SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)
          Length = 352

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 PQLIDGILKYGDRVHTMSLPRASAPP 407
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 220 PQLVDGVLRVGGRIDRADIPWETKHP 245


>SB_35583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 PQLIDGILKYGDRVHTMSLPRASAPP 407
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 727 PQLVDGVLRVGGRIDRADIPWETKHP 752


>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
          Length = 1012

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 330  PQLIDGILKYGDRVHTMSLPRASAPP 407
            PQL+DG+L+ G R+    +P  +  P
Sbjct: 945  PQLVDGVLRVGGRIDRADIPWETKHP 970


>SB_51743| Best HMM Match : DPRP (HMM E-Value=0.4)
          Length = 281

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 PQLIDGILKYGDRVHTMSLPRASAPP 407
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 233 PQLVDGVLRVGGRIDRADIPWETKHP 258


>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 330  PQLIDGILKYGDRVHTMSLPRASAPP 407
            PQL+DG+L+ G R+    +P  +  P
Sbjct: 1144 PQLVDGVLRVGGRIDRADIPWETKHP 1169


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 314  SH-PLEAAADRRNPQVRRQGPHDVSAQSFCSARTTPQTRLSXSSTSPIL 457
            SH PL+++   +N  + +QGP  VS++   +  T    R   S T P++
Sbjct: 958  SHTPLKSSVSAKNCNLPKQGPVTVSSKPAIALTTLAPQRTLSSLTGPLI 1006


>SB_1692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 PQLIDGILKYGDRVHTMSLPRASAPP 407
           PQL+DG+L+ G R+    +P  +  P
Sbjct: 150 PQLVDGVLRVGGRIDRADIPWETKHP 175


>SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 330 PQLIDGILKYGDRVHTMSLP 389
           PQL+DG+L+ G R+    LP
Sbjct: 176 PQLVDGMLRVGGRIDRADLP 195


>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 330 PQLIDGILKYGDRVHTMSLP 389
           PQL+DG+L+ G R+    +P
Sbjct: 901 PQLVDGVLRVGGRIDRADIP 920


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,042,248
Number of Sequences: 59808
Number of extensions: 234380
Number of successful extensions: 697
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)