Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0324
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39651-6|AAL11483.1|  286|Caenorhabditis elegans Temporarily ass...    29   2.2  
U39651-5|AAL11482.2|  395|Caenorhabditis elegans Temporarily ass...    29   2.2  
AC024843-10|AAF60845.2|  526|Caenorhabditis elegans Hypothetical...    29   3.0  
U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    27   6.9  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    27   6.9  
U55363-1|AAK71420.1|  340|Caenorhabditis elegans Serpentine rece...    27   6.9  
Z83234-1|CAB70169.1|  313|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U39651-6|AAL11483.1|  286|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 22, isoform b protein.
          Length = 286

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 219 GTRRGILFRASERDHQDAANSIMGIVVENIEPHIHWKPQLIDGILKYGDR 368
           G     L R SE +  D + S+ GI     E + H+K Q +DG+LK G+R
Sbjct: 209 GREGEFLVRDSESNPGDLSISMRGI-----ERNKHFKVQNVDGLLKIGNR 253


>U39651-5|AAL11482.2|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 22, isoform a protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 219 GTRRGILFRASERDHQDAANSIMGIVVENIEPHIHWKPQLIDGILKYGDR 368
           G     L R SE +  D + S+ GI     E + H+K Q +DG+LK G+R
Sbjct: 318 GREGEFLVRDSESNPGDLSISMRGI-----ERNKHFKVQNVDGLLKIGNR 362


>AC024843-10|AAF60845.2|  526|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.1 protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 271 ASW*SLSDALKRIP-RLVPVFL*PKLGR 191
           A+W S +  L R+P  LVPVFL  +LGR
Sbjct: 356 ATWLSFATGLLRLPFTLVPVFLVDRLGR 383


>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 263 PGRGELYNGYSGREHRTSHPLEAAADRRNPQVRRQGPHDVSAQSFCSARTTPQTRLS-XS 439
           P RGEL +G +GR HR+S     A+ R       +G     +    S   T  +  S  S
Sbjct: 454 PCRGELSDGSNGRRHRSS---SIASSRSKHSYMSKGKQFSESSGGPSRSHTRVSSFSENS 510

Query: 440 STSPIL 457
           ST PI+
Sbjct: 511 STVPIM 516


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 263 PGRGELYNGYSGREHRTSHPLEAAADRRNPQVRRQGPHDVSAQSFCSARTTPQTRLS-XS 439
           P RGEL +G +GR HR+S     A+ R       +G     +    S   T  +  S  S
Sbjct: 454 PCRGELSDGSNGRRHRSS---SIASSRSKHSYMSKGKQFSESSGGPSRSHTRVSSFSENS 510

Query: 440 STSPIL 457
           ST PI+
Sbjct: 511 STVPIM 516


>U55363-1|AAK71420.1|  340|Caenorhabditis elegans Serpentine
           receptor, class h protein30 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 335 LRLPVDVRFDVLDHYTHYRVRRVLVISFR 249
           + L V +   +L H T YR++ ++ +SFR
Sbjct: 104 MMLSVQINLGILTHITFYRMKIIIPMSFR 132


>Z83234-1|CAB70169.1|  313|Caenorhabditis elegans Hypothetical
           protein K09E4.3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 376 RCLCPELLLRQDYAPNEIIXQFHVTNFNVRLEIESXX*SGELKSWRNRC 522
           +C  PE+++ +     E +  FH   F++ L   S      L  W  +C
Sbjct: 86  KCEDPEVIVERRTVDEETLDGFHENQFDLLLTSMSAHWINHLPQWMRKC 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,509
Number of Sequences: 27780
Number of extensions: 173055
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)