Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0324
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38330.1 68415.m04709 MATE efflux family protein low similari...    28   3.6  
At3g28350.1 68416.m03543 hypothetical protein                          28   4.8  
At1g01730.1 68414.m00092 expressed protein                             28   4.8  
At3g49307.1 68416.m05390 Expressed protein                             27   8.4  
At2g43700.1 68415.m05432 lectin protein kinase family protein co...    27   8.4  

>At2g38330.1 68415.m04709 MATE efflux family protein low similarity
           to enhanced disease susceptibility 5 [Arabidopsis
           thaliana] GI:16589070; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 521

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = +3

Query: 180 PHQPRPSFGQRKTGTRRGILFRASERDHQDAANSIM--------GIVVENIEPHIHWKPQ 335
           PH+    FG   +  RR I+ ++S RD   A ++           +  +N   H H KP 
Sbjct: 12  PHRSPSRFGNPNSSIRRTIVCKSSPRDESPAVSTSSQRPEKQQNPLTSQNKPDHDH-KPD 70

Query: 336 LIDGILKYGDRVHTMSLPRASA 401
              GI K G  + +++LP A A
Sbjct: 71  --PGIGKIGMEIMSIALPAALA 90


>At3g28350.1 68416.m03543 hypothetical protein
          Length = 290

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 154 DSCVGKYMDRISRVLASVRGRLAQDEEFFLEHRK 255
           + C G  ++ I  +L+ V  +LA++EE +L  +K
Sbjct: 136 EDCSGDDLEAIKNLLSDVHSQLAKEEEGYLAEQK 169


>At1g01730.1 68414.m00092 expressed protein
          Length = 224

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 263 PGRGELYNGYSGREHRTSHPL 325
           PG   +Y+G S  E+R+SHP+
Sbjct: 191 PGTEPVYSGMSKEEYRSSHPI 211


>At3g49307.1 68416.m05390 Expressed protein
          Length = 76

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 150 GRLLRGEVHGPHQPRP 197
           GR   G  HGPH PRP
Sbjct: 54  GRRYPGRPHGPHAPRP 69


>At2g43700.1 68415.m05432 lectin protein kinase family protein
           contains pfam domains PF00139: Legume lectins beta
           domain and PF00069: Protein kinase domain
          Length = 658

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/26 (50%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = -2

Query: 450 GDVELXDNLVWGVVLAEQ-KLWAETS 376
           GD++L DNL+  +V AE+ ++W+ETS
Sbjct: 607 GDLQLPDNLL-DIVKAEKVRMWSETS 631


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,796,795
Number of Sequences: 28952
Number of extensions: 168646
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)