Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0323
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   5.3  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   5.3  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   5.3  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   7.0  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   7.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.2  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 PHYIPGYTGHCPEYKYRIGDTYGST 178
           P YIPG+T      ++  GD Y ST
Sbjct: 128 PKYIPGWTNPICIGRHAFGDQYKST 152


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 384 KAVRHMTRKPFVSWYHGMLVNGIAITETCVHDV 286
           K +R   + P  SW+ GML+ G  +  + V D+
Sbjct: 34  KKIRVFEKLPTFSWHEGMLIPGSNMQISFVKDL 66


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 146 CTRDNDPCTQEYNAVGRSXLNPEPL*IS-----KKNIFGRIVM*LKH 21
           C  D D CTQE    G++   P P+ +      K+ +FG+ ++ L +
Sbjct: 539 CAIDTDDCTQELVDWGKAVAPPTPVLLPLITRLKRTLFGKNMLHLDY 585


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 310 NGDPVYKHPMIPGYEGFSG 366
           N D  Y  P IP Y GFSG
Sbjct: 342 NNDCGYYLPGIPAYHGFSG 360


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 96  KXTKSRAIVNFKKKYFWPNSYV 31
           K TKS +IV F+K YF   +Y+
Sbjct: 332 KLTKSSSIVAFEKLYFLNKNYL 353


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 248 RPFYRIAPAXLNAARSDREGSCVLSSHTYRRSD 150
           +  Y IA   L  +  D+E SC++ S  + R D
Sbjct: 160 KTIYTIAIKYLENSGIDKEASCLVLSRLFSRDD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,466
Number of Sequences: 5004
Number of extensions: 43258
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)