Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0323
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7) 64 9e-11
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33) 36 0.016
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2) 29 1.8
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9) 29 3.1
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13) 28 4.1
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07) 27 9.6
>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
Length = 332
Score = 63.7 bits (148), Expect = 9e-11
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 6/66 (9%)
Frame = +2
Query: 104 PHYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSEXLVLSD------RTADDSRST 265
P++IPGY G+CP++KY+IG+T+G TT +L D SV +S VLSD AD R T
Sbjct: 47 PYHIPGYCGYCPQFKYQIGETFGRTTSCLLTDNSVAYSGKPVLSDIEPQVPPKADTRRDT 106
Query: 266 VQHRMI 283
+++R I
Sbjct: 107 IKNRAI 112
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 355 GFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNV 489
G+SG VP GE LTN AL FSSN + + PV +
Sbjct: 235 GYSGFVPRYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPVTI 279
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 289 IVNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSN 447
I N GD M+PGY +G++P +G S + + SA+ DF N
Sbjct: 107 IKNRAISLGDQKLTDQMVPGY---TGYIPKAEHYYGNSYAETSRSAIADFHQN 156
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 113 IPGYTGHCPEYKYRIGDTYGSTTHKILLD 199
+PGYTG+ P+ ++ G++Y T+ + D
Sbjct: 124 VPGYTGYIPKAEHYYGNSYAETSRSAIAD 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 113 IPGYTGHCPEYKYRIGDTYGSTT 181
+P +TGH P K+R G T+G +T
Sbjct: 301 VPHFTGHVPGEKFRYGMTFGYST 323
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 107 HYIPGYTGHCPEYKYRIGDTYGSTTHKILL 196
H+ GY+G P Y+ +G+ Y T+K L+
Sbjct: 231 HHKSGYSGFVPRYRGLMGEGYPVLTNKALI 260
>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
Length = 834
Score = 36.3 bits (80), Expect = 0.016
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 119 GYTGHCPEYKYRIGDTYGSTTHKI 190
GY G+CP+ KY G TYG T K+
Sbjct: 634 GYRGYCPQLKYECGHTYGIATDKL 657
>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 35.5 bits (78), Expect = 0.027
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 110 YIPGYTGHCPEYKYRIGDTYGSTTHKILLD 199
++PGY G P+ ++R GDT+G+ T K D
Sbjct: 19 HLPGYAGFRPQQQWRYGDTFGNDTAKYFQD 48
>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
Length = 1094
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 200 PSVQHSEXLVLSDRTADDSRSTVQHRMIXTS*THVSVM 313
P V+HS L LS T DDS+ + + T+ T SV+
Sbjct: 121 PPVKHSVTLTLSFMTCDDSKGQINQDDMFTTSTESSVL 158
>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
Length = 646
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 403 TTRRXVESRTAHDPKTLRILVSW 335
T R+ + S TAHDP++L +W
Sbjct: 109 TERKRLRSATAHDPRSLSCFTTW 131
>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
Length = 274
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 100 PTALYSWVHGSLSRVQVS 153
P A Y W HG+LSR++ S
Sbjct: 103 PLAHYPWFHGTLSRIEAS 120
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 293 TMSKSFCAGR*IWSHRPFYRIAPAXLNAARSDREGSCVLSSHTYRRSDTCT 141
T+ +S R + SH R L++ R +C LSSHT R TCT
Sbjct: 1007 TLFQSHPVTRTLSSHT-LSRPVTRTLSSHTLSRHVTCTLSSHTLSRHVTCT 1056
>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
Length = 465
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -2
Query: 369 MTRKPFVSWYHGMLVNGIAITETCVHDVXIILCWTVD 259
+ ++PF+ YH +LVN + + C + V +I+ T++
Sbjct: 210 LNKRPFI--YHQLLVNEVHASVHCFNRVILIISGTIN 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,353
Number of Sequences: 59808
Number of extensions: 330600
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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