Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0323
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49110.1 68418.m06079 expressed protein  ; expression support...    29   1.9  
At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    29   2.6  
At5g01970.1 68418.m00116 expressed protein                             28   3.4  
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    28   3.4  
At2g17750.1 68415.m02056 hypothetical protein   contains Pfam pr...    28   4.5  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    27   5.9  

>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 385 QRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNV 489
           ++FGESS  +  +AL    ++YR  +  +W PV +
Sbjct: 320 RKFGESSLGMLRTALLTAYNDYRLSKDCKWLPVEL 354


>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 110 YIPGYTGHCPEYKYRIGDTYGSTTHKI 190
           Y  G  G  P YKY +G +   T+HKI
Sbjct: 257 YSEGTLGFKPTYKYNVGSSDYDTSHKI 283


>At5g01970.1 68418.m00116 expressed protein
          Length = 351

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 341 YQDTKGFRVMCRTAFNXSASRRKSSLIQLSATFRRITEEGRAL 469
           Y   +GF+ M          +  SSL Q+  TF +  E+GR L
Sbjct: 89  YLSDEGFKKMDNPKLRRGLDKLTSSLNQIGDTFEKAFEDGRTL 131


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
            pentatricopeptide (PPR) repeat-containing protein
            contains Pfam profiles:  PF00271 helicase conserved
            C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH
            box helicase
          Length = 1145

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 353  KGFRVMCRTAFNXSASR--RKSSLIQLSATFRRITEEGRALSGLL*MWSNLILHIHKSHX 526
            KG ++  R A+N   S   RK SL +    FR++TEEG A   L     N+++  H    
Sbjct: 1038 KGVKLDAR-AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELT---YNILIRAHLGDD 1093

Query: 527  D 529
            D
Sbjct: 1094 D 1094


>At2g17750.1 68415.m02056 hypothetical protein   contains Pfam
           profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 396

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 280 DXDIVNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLTNSAL 429
           D DI++    N  P+Y HP+   Y        Y   +  ESS K   S +
Sbjct: 49  DGDIIDCVHMNNHPIYDHPLFKNYTIQMKPSSYPKGKNNESSDKEKQSVV 98


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 147 SIGSAIRMARQHTRSFSIRACSIQXGW 227
           SIGSA R  RQ T++ S+R    Q  W
Sbjct: 234 SIGSACRRLRQLTKNESVRKMVCQNAW 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,445,377
Number of Sequences: 28952
Number of extensions: 226680
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)