Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0322
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.4  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.2  
SPCC338.12 |||protease inhibitor |Schizosaccharomyces pombe|chr ...    25   5.6  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   5.6  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   5.6  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   7.3  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   9.7  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   9.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.7  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 292 AQNEIDIVNARFRNGDPVYKHPMIPGYEGFSG 387
           +  E  I  A   N D  Y  P IP Y GFSG
Sbjct: 329 SDKEFSIWTATECNNDCGYYLPGIPAYHGFSG 360


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 203 HKILLDPSVQHSERLVLSIERPMTSRSTVQHR 298
           ++ ++D  VQHS+RL  S  + ++ RST  H+
Sbjct: 307 YETVVDDLVQHSKRLRNSGRKFLSRRSTSSHK 338


>SPCC338.12 |||protease inhibitor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 257 SIAPASLNAARSDREGSCVLSSHTY 183
           S+ PAS++  +SD E S     HTY
Sbjct: 13  SVDPASMDKIKSDLEASGAKIGHTY 37


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 125 PHYIPGYTGHCPEYKYRIGDTYGST 199
           P YIPG+T      ++  GD Y ST
Sbjct: 128 PKYIPGWTNPICIGRHAFGDQYKST 152


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 405 KAVRHMTRKPFVSWYHGMLVNGIAITETCVHDV 307
           K +R   + P  SW+ GML+ G  +  + V D+
Sbjct: 34  KKIRVFEKLPTFSWHEGMLIPGSNMQISFVKDL 66


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 114 LTKSRAIVNFKKKYFWPNSYV 52
           LTKS +IV F+K YF   +Y+
Sbjct: 333 LTKSSSIVAFEKLYFLNKNYL 353


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 274 FQIYRPAQNEIDIVNARFRNGDPVY 348
           F+    AQN ID +N+R+ +  PVY
Sbjct: 111 FKYEESAQNAIDDLNSRWYSQRPVY 135


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 273 LPDLPSSTERDRHRE 317
           LPDLP S+E DR+ E
Sbjct: 140 LPDLPQSSEVDRNSE 154


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 52  YITIRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVS 174
           Y + R  I        S  + +RP  ++S  H SLS V VS
Sbjct: 17  YASNRVGILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVS 57


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 25  FLNSKLCFNYITIRPKIFFFEIYNGSGFSQYRPTALY 135
           FL +   F  +T +    FFE+  G GFS +RP  +Y
Sbjct: 530 FLTNIKPFEAVTFQK--LFFEV--GKGFSYFRPEQVY 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,600
Number of Sequences: 5004
Number of extensions: 56804
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)