Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0322
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533... 29 2.4
05_01_0576 - 5130589-5131995 29 3.2
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 28 5.6
05_01_0569 + 5056261-5057712 28 5.6
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 27 7.5
03_02_0098 + 5608787-5610812,5610956-5611053 27 7.5
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 27 9.9
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 27 9.9
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 27 9.9
>02_05_1007 +
33452774-33452993,33453028-33453122,33453208-33453329,
33453392-33453694,33454657-33454918,33455039-33455140,
33455931-33457151,33457250-33457342
Length = 805
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 399 RLSTFRRVVEKAH*FSSLRLFVELPKKAEH*VGSCKWVKPDPPLSINP 542
++++ R+ V +A S LR ++ PK V + KW P PP + P
Sbjct: 188 KVTSVRQAVRQAPAVSPLRTMIQGPKPDN--VSTQKWTPPPPPSTTRP 233
>05_01_0576 - 5130589-5131995
Length = 468
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 148 GSLSRVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTADD 273
G RV V +R W D +DP+ A FR A + R D
Sbjct: 102 GGGRRVWVRERSTEWWDRMRDPAACPEAEFRRAFRMPRAVFD 143
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 61 IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 234
+ P +F +Y G P+ S S R Q++ +WL Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440
>05_01_0569 + 5056261-5057712
Length = 483
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 160 RVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTADD 273
RV V +R W D +DP+ A FR A + R D
Sbjct: 119 RVWVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFD 156
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 340 PVYKHPMIPGYEGFSGHVPYGFQRFGESSKK 432
P Y HP I E + +P F++ GE+ K+
Sbjct: 266 PCYHHPEIQELEFKNSSLPSSFRKLGETEKR 296
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 503 TGAHSVLCLLR*FDEKSQRAELVSFFDDSP 414
+G H LC ++ D + +RA L +FF + P
Sbjct: 44 SGCHCFLCAIKEPDARLRRASLAAFFRELP 73
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 355 PMIPGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNG 510
P+ P EG GH + F FG+ S N + +F + + EW+ ++G
Sbjct: 339 PLHPSREG--GHTSFTFGGFGKGSSSSQNPSQLEFRT-LDLNSAYEWSAMHG 387
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 419 SRRKSSLIQLSATFRRITEEGRALSGL 499
S R+ L+QLS + + TE GRA++GL
Sbjct: 205 SLRRLQLMQLSVSTLKATEIGRAVNGL 231
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 86 KFTMALDLVSIAQPHYIPGYTGHCPEYKYRI 178
+F M ++L+S + Y+ G GHC E +R+
Sbjct: 169 EFEMEVELLSRLRSPYLLGLIGHCSEGGHRL 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,310
Number of Sequences: 37544
Number of extensions: 367037
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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