Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0322
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61350.1 68418.m07698 protein kinase family protein contains ...    30   0.89 
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    29   2.0  
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    29   2.0  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    29   2.7  
At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    29   2.7  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   4.7  
At5g01970.1 68418.m00116 expressed protein                             27   6.2  
At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger) fa...    27   6.2  
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    27   8.3  
At1g77500.1 68414.m09025 expressed protein contains Pfam domains...    27   8.3  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   8.3  

>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 300 RDRHRERTFP*WRSRLQASHDTRIRRVFGSCAVRLSTFRRVVEKAH*FSS 449
           +D  ++ +F  W   L ASH + I    GS + R+S F     K++ FSS
Sbjct: 453 KDWQKQNSFSSWLLPLHASHSSYISSKGGSTSRRMSIFGSKKSKSNGFSS 502


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 348 VNGIAITETCVHDVYLVLCW-TVDLEVIGRSIDSTSLSECCTLGSRRILCVVEPYVS 181
           V G A T TC +DVY   C+  + LE+I   +    +S C     ++IL  + PY+S
Sbjct: 681 VPGSAATATCAYDVY---CFGKILLELITGKL---GISSCKETQFKKILTEIMPYIS 731


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
            pentatricopeptide (PPR) repeat-containing protein
            contains Pfam profiles:  PF00271 helicase conserved
            C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH
            box helicase
          Length = 1145

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 374  KGFRVMCRTAFNVSASR--RKSSLIQLSATFRRITEEGRA 487
            KG ++  R A+N+  S   RK SL +    FR++TEEG A
Sbjct: 1038 KGVKLDAR-AYNIMISELCRKDSLSKADILFRKMTEEGHA 1076


>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 406 QRFGESSKKLTNSALCDFSSNYRRRQSTEWAPV 504
           ++FGESS  +  +AL    ++YR  +  +W PV
Sbjct: 320 RKFGESSLGMLRTALLTAYNDYRLSKDCKWLPV 352


>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 YIPGYTGHCPEYKYRIGDTYGSTTHKI 211
           Y  G  G  P YKY +G +   T+HKI
Sbjct: 257 YSEGTLGFKPTYKYNVGSSDYDTSHKI 283


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 168 SIGSAIRMARQHTRSFSIRACSIQRGW 248
           SIGSA R  RQ T++ S+R    Q  W
Sbjct: 234 SIGSACRRLRQLTKNESVRKMVCQNAW 260


>At5g01970.1 68418.m00116 expressed protein
          Length = 351

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 362 YQDTKGFRVMCRTAFNVSASRRKSSLIQLSATFRRITEEGRAL 490
           Y   +GF+ M          +  SSL Q+  TF +  E+GR L
Sbjct: 89  YLSDEGFKKMDNPKLRRGLDKLTSSLNQIGDTFEKAFEDGRTL 131


>At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger)
           family protein (ATL4) contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 334

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 540 DLWIMEDQV*PIYRSPLSALPSSVIR 463
           D+W++ +Q  P+ RSPL A  S +++
Sbjct: 146 DIWLVSNQTCPLCRSPLFASESDLMK 171


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 343 RDRHYGNVRSRCLSRSVLDGRSGSHRPFYR 254
           RDR +G  RSR +SRS    R    R  YR
Sbjct: 148 RDRSHGRSRSRSISRSRSPRRPSDSRSRYR 177


>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 879

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 364 PGYEGFSGHVPYGFQRFGESSKKLTNSALCDFS-SNYRRRQSTEWAPVNG 510
           PGY  ++G  PYG +      K    S    F   N+R  ++ +W   +G
Sbjct: 184 PGYPNYTGENPYGNRGMYYMKKSAPQSRPFIFQPENHRVEENAQWPSDSG 233


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 343 RDRHYGNVRSRCLSRSV-LDGRSGSHRPFYR 254
           R R Y + R R  S S    GRS S+ PFYR
Sbjct: 191 RSRSYSSDRGRSYSPSYGRRGRSSSYSPFYR 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,993
Number of Sequences: 28952
Number of extensions: 297066
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)