Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0321
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   4.7  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.1  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   6.1  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    24   8.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    24   8.1  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    24   8.1  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 208 PRVQQFFLGH*PLLTLAMSQLSAGPVPDIRQ 116
           PR+  F +G  PL  +  S   A  VP++ Q
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 269 GIAENIWSPYGGVPPFITEPAARST 195
           GIAE++  P+GG  P   E  + +T
Sbjct: 432 GIAESVMDPFGGKLPTTYEETSSAT 456


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 285 SRTMIPVRAHTKPCLRLAYKLDPTKS 362
           S+T IP + HTK  LRL+   D  +S
Sbjct: 768 SQTFIPSQTHTKLDLRLSDVTDSVRS 793


>SPAC17H9.07 |||signal recognition particle subunit Srp21
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3  FLERARKFFTGTGRRSLAFYKTKKCRIKFST 95
          +L+   +FFT +   + A+ KT K  IK+ T
Sbjct: 3  YLQTVNEFFTQSKSLTEAYPKTTKLSIKYRT 33


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 127 DIRQCVSKNNRVENFIRHFFV 65
           ++ QC SK  RV   +RH+F+
Sbjct: 47  NVYQCPSKGERVYLALRHWFI 67


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 228 WHTSVGAPNVFRYPTFKLTSRTMIPVR 308
           WH + G   +  +    LT+ T +PVR
Sbjct: 532 WHATNGQTGIASFSMGSLTADTYVPVR 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,034
Number of Sequences: 5004
Number of extensions: 32877
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)