Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0321
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -1

Query: 262 RKTFGAPTEVCHRSSQSRPRVQQFFLGH*PLLTLAMSQLSAGPVPDIRQCVSKNNRVENF 83
           RKT   PT     +S +RP +Q   L   PL+    +    G    I +C+       N 
Sbjct: 302 RKTSAPPTSTTSTASTARPNIQTNRLSTAPLVQSGSTDCCFGVSLRINRCIF------ND 355

Query: 82  IRHFFVL*NAKDRRPVPVKNFL 17
           I+H +   N+ + +   +KNF+
Sbjct: 356 IQHIY---NSNNAQLKNLKNFI 374


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 270  TFKLTSRTMIPVRAHTKPCL 329
            T K++SRT +P+ +HT+  L
Sbjct: 2052 TIKISSRTRVPIHSHTRDVL 2071


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,811,168
Number of Sequences: 59808
Number of extensions: 257005
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)