Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0321
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical pr... 27 4.1
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 27 4.1
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 27 4.1
AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeri... 27 4.1
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 27 4.1
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 27 4.1
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 27 4.1
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 27 7.1
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 27 7.1
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 26 9.4
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 26 9.4
>Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical
protein F48C11.1 protein.
Length = 364
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 95 PVIFGYALSNIWHWPSTELRHCQRQQR 175
PV+ G + +WH PS +L + R+ R
Sbjct: 130 PVVIGRCMDRVWHSPSLQLCYDTRRFR 156
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like (fly
gap gene related)protein 1, isoform b protein.
Length = 960
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 45 RSLAFYKTKKCRIKFSTRLFLDTHCRISGTGPALSC 152
R AFY C+I F T+ LD+H R G C
Sbjct: 903 RPSAFY-CDHCKIPFDTQQVLDSHMRFHTPGNPFMC 937
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like (fly
gap gene related)protein 1, isoform a protein.
Length = 982
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 45 RSLAFYKTKKCRIKFSTRLFLDTHCRISGTGPALSC 152
R AFY C+I F T+ LD+H R G C
Sbjct: 925 RPSAFY-CDHCKIPFDTQQVLDSHMRFHTPGNPFMC 959
>AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 364
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 95 PVIFGYALSNIWHWPSTELRHCQRQQR 175
PV+ G + +WH PS +L + R+ R
Sbjct: 130 PVVIGRCMDRVWHSPSLQLCYDTRRFR 156
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 53 SVLQDKKMSNKIFDPVIFGYA--LSNIWHWPSTELRH 157
S+++DK + F + GYA L NIW +PS +H
Sbjct: 97 SMVRDKWATKMEFLLAVVGYAVDLGNIWRFPSVCYKH 133
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-related
protein protein.
Length = 982
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 45 RSLAFYKTKKCRIKFSTRLFLDTHCRISGTGPALSC 152
R AFY C+I F T+ LD+H R G C
Sbjct: 925 RPSAFY-CDHCKIPFDTQQVLDSHMRFHTPGNPFMC 959
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 53 SVLQDKKMSNKIFDPVIFGYA--LSNIWHWPSTELRH 157
S+++DK + F + GYA L NIW +PS +H
Sbjct: 97 SMVRDKWATKMEFLLAVVGYAVDLGNIWRFPSVCYKH 133
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/65 (20%), Positives = 29/65 (44%)
Frame = +3
Query: 27 FTGTGRRSLAFYKTKKCRIKFSTRLFLDTHCRISGTGPALSCDIANVNRG*CPKKNC*TR 206
F+G + + +Y + ++F+ +C+++ TG C ++ + C K C
Sbjct: 284 FSGFQQVDVYYYSGPRSTVQFNFDYVEVNNCKLNCTGDNGKCIVSQSGQQYCECKKCEFS 343
Query: 207 GRLCD 221
G C+
Sbjct: 344 GTNCE 348
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/65 (20%), Positives = 29/65 (44%)
Frame = +3
Query: 27 FTGTGRRSLAFYKTKKCRIKFSTRLFLDTHCRISGTGPALSCDIANVNRG*CPKKNC*TR 206
F+G + + +Y + ++F+ +C+++ TG C ++ + C K C
Sbjct: 287 FSGFQQVDVYYYSGPRSTVQFNFDYVEVNNCKLNCTGDNGKCIVSQSGQQYCECKKCEFS 346
Query: 207 GRLCD 221
G C+
Sbjct: 347 GTNCE 351
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +3
Query: 114 HCRISGTGPALSCDIANVNR------G*CPKKNC*TRGRLCDERWHTSV 242
HC ++ +GPA C++ R C C +RG C W+ +V
Sbjct: 1343 HCVMTVSGPACQCEMGYTGRFCEKLLNQCSSNTCSSRG-ACSPVWNNTV 1390
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 102 FLDTHCRISGTGPALSCDIANVNRG*CPKKN-C*TRG 209
F+ T C S P L C I + + G C KK C T+G
Sbjct: 60 FMSTECSYSAVCPELFCKIGH-HPGYCMKKGYCCTQG 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,604,848
Number of Sequences: 27780
Number of extensions: 194025
Number of successful extensions: 396
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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