Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0321
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11310.1 68416.m01375 hypothetical protein                          27   6.6  
At3g01670.1 68416.m00098 expressed protein                             27   6.6  

>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 259 KTFGAPTEVCHRSSQSRPRVQQFFLGH*P 173
           KTFGA +E     S+   R +QF L H P
Sbjct: 262 KTFGATSEDWENYSKENKRAEQFRLKHIP 290


>At3g01670.1 68416.m00098 expressed protein
          Length = 822

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 17  KKVLHRNRPPVFSVLQDKKMSNKI 88
           K+  HRN  P+FS+  D+ M++++
Sbjct: 123 KQAFHRNGRPMFSLSDDRVMADRV 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,940,526
Number of Sequences: 28952
Number of extensions: 175372
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)