Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0320
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395           29   3.2  
06_03_0002 - 15280292-15281550,15282714-15282840                       28   5.6  
04_01_0271 + 3612066-3614056,3614666-3614780                           28   5.6  
01_01_0522 - 3834551-3835451,3835992-3836572                           28   5.6  
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375...    27   9.9  
03_01_0656 - 4803111-4803133,4803609-4803641,4803772-4804135           27   9.9  

>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
          Length = 704

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 222 RCNLQDLFEGTGETPSAVCKEPLKC 296
           RC  Q+ FEG G T  A C+   KC
Sbjct: 236 RCECQEGFEGDGYTAGAGCRRVPKC 260


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 RVCTKLV*SFSLAGKYKLAILLSRPVRNIICV 398
           R C + V  + +AG+++ A++    V N ICV
Sbjct: 196 RCCNRCVHPYCIAGEHRAALIQPIDVENFICV 227


>04_01_0271 + 3612066-3614056,3614666-3614780
          Length = 701

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 54  WHALXHSVRCFGMWYRL 104
           W +L H+V C G W+RL
Sbjct: 341 WSSLRHAVLCAGRWHRL 357


>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 118 PCIQPPLVCPKNTEHRXRHAGKXACCPACVTXLGEG-ATCKIYSKELAKPPPLCVRSLSN 294
           P IQP L C     H+  HA + A   A     G+G    +    E A+P  + V  ++ 
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVAA 330

Query: 295 ASKEF 309
            SK F
Sbjct: 331 RSKSF 335


>07_01_0503 -
           3751028-3751063,3751145-3751231,3751333-3751410,
           3751488-3751583,3752124-3752210,3752289-3752357,
           3752511-3752600,3752601-3752720,3752907-3753004,
           3753084-3753193,3753463-3753533,3753679-3753714,
           3753862-3753973,3754495-3754700
          Length = 431

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 16  KFQNENVDFYNAGGMRCXTAYGALVCGTDYCEKNP----CIQPPLVC 144
           KF+  + + +N GG+   + YGA+  G  Y  ++P    C  P L C
Sbjct: 166 KFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCHVPGLKC 212


>03_01_0656 - 4803111-4803133,4803609-4803641,4803772-4804135
          Length = 139

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +1

Query: 175 AGKXACCPACVTXLGEGATCKIYSKE---LAKPPPLCVRSLSNASKEFALSLCSRFH*QE 345
           AG  A    C   L   A C  Y +E   +AKP   C   L    K+    LC  F   +
Sbjct: 33  AGAPAPAADCTDALLSLAGCLSYVQEGSTVAKPDAPCCSGLKGVVKKEVACLCQAFQGSQ 92

Query: 346 NISL 357
           N  +
Sbjct: 93  NFGV 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,270,297
Number of Sequences: 37544
Number of extensions: 277705
Number of successful extensions: 694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)