Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0320
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 1.1
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 1.1
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 30 1.1
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13) 27 7.6
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12) 27 7.6
>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 68 SQRTVLWYVVQTTVKKIHAYSHHLFALRTLSIAPD 172
S+R VLW V + ++ + A+S+ LF+L + + PD
Sbjct: 172 SERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Frame = +1
Query: 88 VCGTDYCE-KNPCIQPPLVCPKNTEHRXRHAGKXACC---------PACVTXLGEGATC 234
VCG+D +N C L CPKN +H G A C CVT L + A C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPCRLAECHKVYAKCVTTLYQTARC 1215
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 82 ALVCGTD-YCEKNPCIQPPLVCPKNTEHRXRHAGKXACCPACVTXLGE 222
A VCGTD + CI C R +HAG+ C V G+
Sbjct: 372 APVCGTDDRTYPSECIMKTSACADKKAVRVKHAGECGPCGTLVCTNGK 419
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +1
Query: 88 VCGTDYCE-KNPCIQPPLVCPKNTEHRXRHAGKXACCPACVTXLGEGA-TCK-IYSKELA 258
VCG+D NPC+ C N +H GK +C +G CK I +K
Sbjct: 180 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMIGNKPRC 239
Query: 259 KPPP 270
PP
Sbjct: 240 MRPP 243
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +1
Query: 88 VCGTD-YCEKNPCIQPPLVCPKNTEHRXRHAGKXA-----CCPAC 204
VCG+D NPC+ VC N + R +H G C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +1
Query: 88 VCGTDYCE-KNPCIQPPLVCPKNTEHRXRHAGKXACCPACVTXLGEGA-TCK-IYSKELA 258
VCG+D NPC+ C N +H GK +C +G CK I +K
Sbjct: 37 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMIGNKPRC 96
Query: 259 KPPP 270
PP
Sbjct: 97 MRPP 100
>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = +3
Query: 252 TGETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAILLSRPVRNIICVRNKIDNNMHCS 431
T E + ++ LK + VC K + G + L ++ V + N+H +
Sbjct: 244 TDEKKKTIFRDLLKLLDEVCKKAKCHVLIGGDFNLKYAIAETVVTEVVQERSNQYNLHTN 303
Query: 432 KYRNLKLKNM 461
Y+N K M
Sbjct: 304 GYQNKPRKKM 313
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 370 DRSIASLYFPANENDYTSLVQTLLMHLRGSLHTAEGVSPV-PSNKSC 233
D + + Y P E DY ++ H+ GS TA+ PV PS C
Sbjct: 1529 DGTCSVSYIPVEEGDYDIHIKFADEHIPGSPFTAKAGRPVDPSKVKC 1575
>SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 423 HCSKYRNLKLKNMN 464
HCSKYRN+K K +N
Sbjct: 264 HCSKYRNIKQKYIN 277
>SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 115 NPCIQPPLVCPKNTEHRXRHAGKXACCPACV 207
N C+ P L C N E+R R K CC + +
Sbjct: 162 NSCLNPFLYCLTNKEYR-REFTKLLCCKSAI 191
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 139 VCPKNTEHRXRHAGKXACCPACVTXLG-EGATCKIYSKE 252
+CP NT K CPA ++ G +GAT K +E
Sbjct: 2764 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSKDQCRE 2802
>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
Length = 340
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 139 VCPKNTEHRXRHAGKXACCPACVTXLG-EGATCKIYSKE 252
+CP NT K CPA ++ G +GAT K +E
Sbjct: 65 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSKDQCRE 103
>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
Length = 515
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +1
Query: 25 NENVDFYNAGGMRCXTAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRXRHAG 180
++NV+ N GG YG C YC N P C N R + G
Sbjct: 88 SQNVNVRNCGGFYIYEIYGTPTCNLRYC-GNGGAGPSSCCNWNENIRILNCG 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,461
Number of Sequences: 59808
Number of extensions: 338824
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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