Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0319
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   5.7  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   7.5  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   10.0 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   10.0 
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   10.0 
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   10.0 
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   10.0 

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 286 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 411
           + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 233 TACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 448 STPRSGVGAADSRTSRGTIMLFSIYSIH 531
           S P+SG  +  +  +  T M++ +YS+H
Sbjct: 212 SVPKSGSTSFSANVTSSTSMVYLLYSVH 239


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 65  YKMTSSENFDEFMKTIGVGLITR 133
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 268 DGAKVKSVCTFEGNTLKQVQKAPDGLEVTY 357
           D  +++++C+F+   LK   + P+   VTY
Sbjct: 313 DTERLENLCSFQSTILKHALQFPNCRHVTY 342


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 7    NLSLKSIKLIYKNGIRRQEIQDDF 78
            NL L   +++++NGI     QDDF
Sbjct: 1815 NLQLGGTQVMHRNGISHLTSQDDF 1838


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 207 EEVTKLYSSPSLRSSTVGVTALAALRVIRPTPM 109
           +E T +YS+ SL  +  G  ALA L  ++ TP+
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTPI 39


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 416 APESTRSSKRTLLRGREXVPPIHEHPAAQ 502
           AP++T SS   L + ++ +P  +EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 189 YSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVILY 64
           +  P +      +T LAA    R    V  N +KFS + +LY
Sbjct: 240 HEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLY 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,443
Number of Sequences: 5004
Number of extensions: 39938
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)