Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0319
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    28   5.9  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
 Frame = -1

Query: 411 HVLSCHHSFHLLRAEFPDVSDFKTVXXXXXXLEGVAFECAYGFHLST---VSAVLSNSSP 241
           H+ +CHH    LR  F  VS              + +   YG H      +   L ++  
Sbjct: 74  HLTACHHLLFALRDAFNSVSSSTVCITGCIQCRVIIYYVHYGMHSMACHHLLCALRDAFI 133

Query: 240 GLNFISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVI 124
            +  +SV+ +  ++T  Y    L   T+ +T     RVI
Sbjct: 134 NVPILSVIARF-DLTFKYLQIELPFFTMCITGCIQWRVI 171


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 195 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 106
           +L+ SP+LRS  +G+   +AL+ + P  MV
Sbjct: 13  RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41


>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 234 NFISVVLKVEEVTKLYSSPSLRSSTVGVTALAAL-RVIRPTPMVFMNSSKFSEEVILYFL 58
           NF+  V   E    +   P +  +  G T+  ++ R  +PTP+    +    E +  YF+
Sbjct: 387 NFVQHVGLPERQLAIRVCPRMGKAHNGETSYGSIKRRAQPTPLNVQRTQGGHEGIAFYFI 446

Query: 57  PTNSIFID 34
            + S+FI+
Sbjct: 447 FSGSVFIN 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,293,122
Number of Sequences: 59808
Number of extensions: 313543
Number of successful extensions: 876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)