Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0319
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r...    29   2.8  
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    27   6.4  
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    27   6.4  
At3g19970.1 68416.m02527 expressed protein                             27   6.4  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   6.4  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   6.4  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   6.4  
At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containi...    27   8.5  

>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +2

Query: 299 SKATPSSKXRRPPTVLKSLTSGNSALRR*KL**QLRT*LAPESTRSSKRTLLRG 460
           SK  P SK RR  +  K  TS +S+L +  +  +    L PEST SS RT+  G
Sbjct: 736 SKEKPQSKKRRDRSKKKPSTSISSSLDK-TVEHKPSVNLKPESTSSSLRTIEEG 788


>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1260

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 241 RRRVREDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT-AKDVTC 417
           RR++ E   D  K++S+C  +G T++ +     G+E    +    +  K   +   ++  
Sbjct: 670 RRKLLEVTLDRDKLRSLCDEKGTTIQSLMSELRGMEARLAKSGNTKSSKETKSELAEMNN 729

Query: 418 TRVYKVQ 438
             +YK+Q
Sbjct: 730 QILYKIQ 736


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1259

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 241 RRRVREDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT-AKDVTC 417
           RR++ E   D  K++S+C  +G T++ +     G+E    +    +  K   +   ++  
Sbjct: 669 RRKLLEVTLDRDKLRSLCDEKGTTIQSLMSELRGMEARLAKSGNTKSSKETKSELAEMNN 728

Query: 418 TRVYKVQ 438
             +YK+Q
Sbjct: 729 QILYKIQ 735


>At3g19970.1 68416.m02527 expressed protein
          Length = 434

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 270 VSAVLSNSSPGLNFIS-VVLKVEEVTKLYSSPSLRSSTVGVTALAALRVI 124
           VS V ++    L+F+S + + V  V  L S+PS   +T  VT+L+ALR +
Sbjct: 62  VSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLAT-SVTSLSALRSV 110


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 68  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 181
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 68  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 175
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 68  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 175
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


>At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 469

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 221 TEMKFKPGEEFERTALTVLR*NPYAHSKATPSSKXRRPPTVLKSL 355
           T + F   EE E+    + R N  A + A  +S+ RRP TVL+++
Sbjct: 382 TRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINSEARRPLTVLQNM 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,200
Number of Sequences: 28952
Number of extensions: 222320
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)