Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0318
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.88 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 131 LPELSSDLVAALTSLDMYDFPHFVLFM 51
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 405 DSVLDIVRKEAESCDCLQG 461
           DS+++I+R   ++CD L G
Sbjct: 107 DSIINIIRVRVDACDRLWG 125


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 192 QLERINVYYNEASGGKYVPRASSSTWSPA 278
           QL+R ++ +N    G+  PR+ +++ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 71   PHFVLFM*TINYLTLKICPH 12
            P   L   T N LT+K+ PH
Sbjct: 1370 PQITLTATTTNSLTMKVRPH 1389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,062
Number of Sequences: 438
Number of extensions: 3363
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)