Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0316
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           28   2.0  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   2.7  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    26   6.2  
12_02_0315 - 17417161-17417401,17419426-17419616                       26   8.3  
01_02_0003 + 10077414-10077653                                         26   8.3  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 146 LMESXDPQCHILQHRRPRLPLMQLEAXCXFNFCSLRAIRRYKSYYVD 6
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 31  RIARREQKLKXHXASSCISGKRGRRC 108
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
 Frame = +1

Query: 31  RIARREQKLKXHXASSCIS---GKRGRRCCNIWHWGSXDSISGSRARFQLSGNSGRKHSR 201
           R  +  QK K      C     G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 82  RKGKSAQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>12_02_0315 - 17417161-17417401,17419426-17419616
          Length = 143

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 109 CNIWHWGSXDSISGSRARFQLSGNSGRKHSRCFTSILREF 228
           C IW   +  ++ G+++ F L+G       RC   +L EF
Sbjct: 16  CGIWQKAAMVALQGNKSWFGLAGGGATVRLRC---VLAEF 52


>01_02_0003 + 10077414-10077653
          Length = 79

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 245 QCCRPVNSRSMLVKQRLCFLPLFPLS*NRAREPL 144
           +C RP  S S  V +R   LPL P   +R   PL
Sbjct: 39  RCARPARSSSAAVLRREHLLPLRPEHRHRHHPPL 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,770,703
Number of Sequences: 37544
Number of extensions: 125264
Number of successful extensions: 219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)