Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0316
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07790.1 68418.m00892 expressed protein                             27   2.3  
At5g58850.1 68418.m07374 myb family transcription factor (MYB119...    25   9.3  
At3g20820.1 68416.m02633 leucine-rich repeat family protein cont...    25   9.3  

>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 73  SSCISGKRGRRCCNIWHWGSXDSISGSRARFQLSGNSGRKHSRCFTSI 216
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At5g58850.1 68418.m07374 myb family transcription factor (MYB119)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain
          Length = 430

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 28  LRIARREQKLKXHXASSCISGKRGRRCCNIWH 123
           +R+ R+  + K    S  + G+ G++C   WH
Sbjct: 117 IRLVRQHGERKWAMISEKLEGRAGKQCRERWH 148


>At3g20820.1 68416.m02633 leucine-rich repeat family protein
           contains similarity to Cf-2.1 [Lycopersicon
           pimpinellifolium] gi|1184075|gb|AAC15779; contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 365

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 97  GRRCCNIWHWGSXDSISGSRARFQLSGNS 183
           G+ CC+ W+  S DS++   A   L G S
Sbjct: 48  GQDCCHNWYGISCDSLTHRVADINLRGES 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,973,741
Number of Sequences: 28952
Number of extensions: 92199
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)