Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0314
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    24   8.6  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    24   8.6  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    24   8.6  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    24   8.6  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 295 TGFVVNASLTRIFYIRHVI 239
           TGFVVN +L  I   RHV+
Sbjct: 100 TGFVVNKTLGLILSNRHVV 118


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 167 NVGDNIIRACSAKRVXVKVM 108
           N+GD+I+ AC  K +  K++
Sbjct: 131 NIGDDILSACIPKEIYEKML 150


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 364 GFSLQTLLKHD-EIVFIRNFLNLVTGFVVNASL 269
           G ++   LK + +++F  NFLN+V G +   SL
Sbjct: 471 GHAVDIYLKQERKVLFSLNFLNIVQGGIFTFSL 503


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 126 SLCTTCSYNIVTDIXSHFSV 185
           +LCTTC+ +++T+I    +V
Sbjct: 577 TLCTTCASHLLTEIDGFMAV 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,669
Number of Sequences: 5004
Number of extensions: 24029
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)