Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0314
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53737| Best HMM Match : DUF1043 (HMM E-Value=0.4)                   28   2.8  
SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6)                   28   2.8  
SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)                     28   2.8  
SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.8  
SB_26349| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  

>SB_53737| Best HMM Match : DUF1043 (HMM E-Value=0.4)
          Length = 174

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 373 CLVGFSLQTLLKHDEI---VFIRNFLNLVTGFVVNASLTRIFY 254
           CL    + T++K+D +   VF+   L L+ GF++ A + R  +
Sbjct: 5   CLTVNVIDTIIKYDTLGGLVFLAFLLALIVGFIIGALIMRCIF 47


>SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6)
          Length = 291

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 TCSYNIVTDIXSHFS 182
           TCS NIVTD+  HFS
Sbjct: 34  TCSGNIVTDVSDHFS 48


>SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)
          Length = 353

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 TCSYNIVTDIXSHFS 182
           TCS NIVTD+  HFS
Sbjct: 292 TCSGNIVTDVSDHFS 306


>SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 TCSYNIVTDIXSHFS 182
           TCS NIVTD+  HFS
Sbjct: 97  TCSGNIVTDVSDHFS 111


>SB_26349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 247 DEYKKCVLGRR*PQIQLLNLKNS 315
           D+YK CV G++ PQ++L+N+  S
Sbjct: 25  DDYKDCVFGKK-PQMRLMNVIRS 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,271
Number of Sequences: 59808
Number of extensions: 165819
Number of successful extensions: 312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)