Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0314
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64550.1 68418.m08112 loricrin-related contains weak similari...    26   9.3  
At2g05300.1 68415.m00558 F-box family protein contains F-box dom...    26   9.3  

>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 634

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 276 ALTTNPVTKFKKFLIKTISSCLRSVCREKPTRHH 377
           A TT   T   +  +  +S C+ S+ R  P  HH
Sbjct: 526 ATTTTTTTDHSQSGVSAVSDCMDSIDRPLPPLHH 559


>At2g05300.1 68415.m00558 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 420

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 363 PTRHHSTSADIFKPLMNCPR 422
           P + HST  D FK L+  PR
Sbjct: 391 PLKSHSTKDDFFKKLLEIPR 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,085,921
Number of Sequences: 28952
Number of extensions: 115926
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)