Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0312
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     29   2.5  
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)        29   3.3  
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   4.3  
SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)          28   5.7  

>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 68  SQRTVLWYVVQTTVKKIHAYSHHLFALXTLSIAPD 172
           S+R VLW V  + ++ + A+S+ LF+L + +  PD
Sbjct: 172 SERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = +1

Query: 88  VCGTD-YCEKNPCIQPPLVCPXNTEHRXRHAGXXA-----CCPAC 204
           VCG+D     NPC+    VC  N + R +H G        C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173


>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
          Length = 515

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +1

Query: 25  NENVDFYNAGGMXCXTAYGALVCGTDYCEKNPCIQPPLVCPXNTEHRXRHAG 180
           ++NV+  N GG      YG   C   YC  N    P   C  N   R  + G
Sbjct: 88  SQNVNVRNCGGFYIYEIYGTPTCNLRYC-GNGGAGPSSCCNWNENIRILNCG 138


>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/70 (22%), Positives = 27/70 (38%)
 Frame = +3

Query: 252 TGETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAILLSRPVRNXXCVRNXLDNNMHXS 431
           T E    + ++ LK +  VC K      + G + L   ++  V            N+H +
Sbjct: 244 TDEKKKTIFRDLLKLLDEVCKKAKCHVLIGGDFNLKYAIAETVVTEVVQERSNQYNLHTN 303

Query: 432 KYRNLKLKNM 461
            Y+N   K M
Sbjct: 304 GYQNKPRKKM 313


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 370  DRSIASLYFPANENDYTSLVQTLLMHLRGSLHTAEGVSPV-PSNKSC 233
            D + +  Y P  E DY   ++    H+ GS  TA+   PV PS   C
Sbjct: 1529 DGTCSVSYIPVEEGDYDIHIKFADEHIPGSPFTAKAGRPVDPSKVKC 1575


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
 Frame = +1

Query: 88   VCGTDYCE-KNPCIQPPLVCPXNTEHRXRHAGXXACC---------PACVTLLGEGATC 234
            VCG+D    +N C    L CP N     +H G  A C           CVT L + A C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPCRLAECHKVYAKCVTTLYQTARC 1215


>SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)
          Length = 487

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +1

Query: 106 CEKNPCIQPPLVCPXNTEHRXRHAGXXACCPACVTLLGEGATCKIYSKELAKPPPLCVRS 285
           C +NPC       P  T  +    G       CV  +       +  KE A+P PL VR+
Sbjct: 142 CNENPCPATWYRGPWQTCSQSCDRGVSVRSVLCVRSIKNDEQVALEDKECARPRPLSVRA 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,551
Number of Sequences: 59808
Number of extensions: 287521
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)