Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0312
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.2  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   VFKNFKMKTLIFIMLVACXASQRTVLWYVVQ 100
           +FK FK +  +++++ AC   +   LW V++
Sbjct: 431 LFKTFKDRKYLYMLMEACLGGE---LWTVLR 458


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 273 VCKEPLKCIKRVCTKL 320
           + K PL+C+ R CT +
Sbjct: 106 ITKAPLECMCRPCTSV 121


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 NXLDNNMHXSKYRNLKLKNMNF 467
           N  +NN + + Y+ L+  N+N+
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 NXLDNNMHXSKYRNLKLKNMNF 467
           N  +NN + + Y+ L+  N+N+
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 NXLDNNMHXSKYRNLKLKNMNF 467
           N  +NN + + Y+ L+  N+N+
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 NXLDNNMHXSKYRNLKLKNMNF 467
           N  +NN + + Y+ L+  N+N+
Sbjct: 96  NYNNNNYNNNNYKKLQYYNINY 117


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 163 RXRHAGXXACCPACVTLLGEGAT 231
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 378 VRNXXCVRNXLDNNMHXSKYRN 443
           +RN  CV N  ++N+  +  +N
Sbjct: 409 IRNTHCVNNNQNDNIQNTNNQN 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,787
Number of Sequences: 438
Number of extensions: 2706
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)