Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0311
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    99   5e-22
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.34 
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   7.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 98.7 bits (235), Expect = 5e-22
 Identities = 50/99 (50%), Positives = 59/99 (59%)
 Frame = -1

Query: 549 VFLFTVGGLTGVILPNSSIDITLXDTYYVVAHFHYXXXXXXXXXXXXXXIN*YPLFTGLS 370
           + LFT+GGLTGVIL NS +DI   DTY+VVAHFHY                  P   GL 
Sbjct: 352 LILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLM 410

Query: 369 LNSYILKIQFFTIFIGVNITFFPXHFLGLAGIPRRYSDF 253
            N  +  IQF+ +FIGVNI F P HFLGL G+PRR  D+
Sbjct: 411 YNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDY 449


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 216 NEEII-FHEIYESGNLNIVEVFQLNLKNVXEKMLY 317
           +EE++ + +IYE  NLN +E+ Q+ L+ + E + Y
Sbjct: 399 SEELVNYAKIYEKSNLNCIELVQILLRLLSEVVTY 433


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 358 YTKNSIFYNIYWSKYNIFSXTFFR--FSWNTSTIFRFPD 248
           YT  S F    W  Y+IF   FF+     NT+T  R P+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFKEVRVGNTATNVRKPE 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,638
Number of Sequences: 5004
Number of extensions: 26031
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)