Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0311
(552 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 120 6e-28
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 5.8
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 120 bits (290), Expect = 6e-28
Identities = 58/99 (58%), Positives = 65/99 (65%)
Frame = -1
Query: 549 VFLFTVGGLTGVILPNSSIDITLXDTYYVVAHFHYXXXXXXXXXXXXXXIN*YPLFTGLS 370
VFLFT+GGLTGVIL NSS+D+ + DTYYVVAHFHY + TG
Sbjct: 49 VFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYC 108
Query: 369 LNSYILKIQFFTIFIGVNITFFPXHFLGLAGIPRRYSDF 253
N KI F+ +FIGVNITFFP HFLGLAG PRRYSDF
Sbjct: 109 YNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 147
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 112 SIE*YQNLPPAEHSYNELPIL 50
S+E Q PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/43 (69%), Positives = 32/43 (74%)
Frame = -1
Query: 381 TGLSLNSYILKIQFFTIFIGVNITFFPXHFLGLAGIPRRYSDF 253
TG N KI F+ +FIGVNITFFP HFLGLAG PRRYSDF
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDF 61
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 112 SIE*YQNLPPAEHSYNELPIL 50
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 297 HFLGLAGIPRRYSDF 253
HFLGLAG PRRYSDF
Sbjct: 1 HFLGLAGFPRRYSDF 15
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 112 SIE*YQNLPPAEHSYNELPIL 50
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 297 HFLGLAGIPRRYSDF 253
HFLGLAG PRRYSDF
Sbjct: 1 HFLGLAGFPRRYSDF 15
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 297 HFLGLAGIPRRYSDF 253
HFLGLAG PRRYSDF
Sbjct: 1 HFLGLAGFPRRYSDF 15
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 112 SIE*YQNLPPAEHSYNELPIL 50
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 297 HFLGLAGIPRRYSDF 253
HFLGLAG PRRYSDF
Sbjct: 1 HFLGLAGFPRRYSDF 15
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 112 SIE*YQNLPPAEHSYNELPIL 50
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 297 HFLGLAGIPRRYSDF 253
HFLGLAG PRRYSDF
Sbjct: 1 HFLGLAGFPRRYSDF 15
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 112 SIE*YQNLPPAEHSYNELPIL 50
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -1
Query: 297 HFLGLAGIPRRYSDF 253
HFLGLAG PRRYSDF
Sbjct: 1 HFLGLAGFPRRYSDF 15
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 112 SIE*YQNLPPAEHSYNELPIL 50
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 394 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSXTFFRFSWNT 272
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 123 ISHHQLNDIKIYHQQNIHIMNYQF 52
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,593,031
Number of Sequences: 59808
Number of extensions: 156646
Number of successful extensions: 274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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