Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0311
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 340 FYNIYWSKYNIFSXTF 293
           F+NIYWS Y IF  TF
Sbjct: 11  FFNIYWSFYAIFGFTF 26


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 394 ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSXTFFRFSWNTSTIF 260
           + F+YR +  F + +   F+N  W  + IF    F   W+ S  F
Sbjct: 111 VQFVYRYWAIF-HVRRLSFFNGIWILFWIFLAMMFGVDWSCSVYF 154


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 339 FTIFIGVNITFFPXHFLGLAGIPRRYSDFQTHIF 238
           F   +G NI+     F+GL G P+R +  + HIF
Sbjct: 424 FAALVGNNISRI---FVGLGGPPKRLTSLEEHIF 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,521,151
Number of Sequences: 27780
Number of extensions: 137086
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)