Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0311
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    29   2.1  
At1g23680.1 68414.m02990 hypothetical protein contains Pfam prof...    27   8.3  

>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 195 NREIYEPNEEIIFHEIYESGNL 260
           N E +EPN++++F EI++ G+L
Sbjct: 141 NIEGFEPNQKLVFDEIFKEGDL 162


>At1g23680.1 68414.m02990 hypothetical protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 132

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 251 WKSEYRRGIPAKPKKCXGKNVIFTPINIVKN 343
           W S  +     +PK+  GK +++ P+N +K+
Sbjct: 84  WSSPNKSNCRRQPKRSYGKKLLYIPLNDLKD 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,730,034
Number of Sequences: 28952
Number of extensions: 116217
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)