Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0308
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 116 3e-27
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 115 7e-27
07_01_0697 + 5265079-5266281 31 0.14
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 28 1.3
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.3
07_03_0039 - 12718972-12720699 27 4.1
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 26 5.4
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 26 7.2
02_01_0679 - 5048653-5051394 25 9.5
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 116 bits (280), Expect = 3e-27
Identities = 50/77 (64%), Positives = 59/77 (76%)
Frame = +2
Query: 23 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 202
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 203 CKRTVAGGAXVFSTTAA 253
C + AGGA +T +A
Sbjct: 85 CGKVKAGGAYTMNTASA 101
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 115 bits (277), Expect = 7e-27
Identities = 50/74 (67%), Positives = 57/74 (77%)
Frame = +2
Query: 32 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 211
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 212 TVAGGAXVFSTTAA 253
AGGA +T +A
Sbjct: 93 VKAGGAYTMNTASA 106
>07_01_0697 + 5265079-5266281
Length = 400
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 158 DAMKRSCVGIWSCKRCKRTVAGGAXVFSTTAAYH 259
DA++R C G W +C R GG F A YH
Sbjct: 19 DALQRFC-GAWRDMQCSRRGGGGGDAFVVGAVYH 51
>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
Length = 244
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 199 AMQEDCSR--RSXGILHYCCLSCRSAV-RRLRE 288
A EDC R + GIL Y C SCR+ V ++RE
Sbjct: 145 AQDEDCFRWNNAAGILCYGCESCRAGVMEKVRE 177
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 113 EVTQHAKYTCSFCGKDAM 166
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>07_03_0039 - 12718972-12720699
Length = 575
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 240 ENTXAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 88
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +2
Query: 5 VSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCV 181
+ RF ++V K G Y L K AKYT G A RS
Sbjct: 63 MKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDRSSA 122
Query: 182 GIWSCKRCKRTV 217
G SCK ++ V
Sbjct: 123 GAVSCKLREKNV 134
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 164 MKRSCVGIWSCKRCKRTVAGGAXVFSTTAAYHADLLSGGY 283
+K+ VG W RCK + V S+ YH DL +GGY
Sbjct: 307 IKKGTVGEWI--RCKTGLPYVQDVASSIK-YHFDLTTGGY 343
>02_01_0679 - 5048653-5051394
Length = 913
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +3
Query: 18 LPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 116
LP VPK LELLA++ + V L V+W + WK
Sbjct: 864 LPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,474
Number of Sequences: 37544
Number of extensions: 182313
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -