Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0308
(313 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC) 118 8e-28
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si... 111 9e-26
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic... 30 0.28
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic... 30 0.28
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic... 30 0.28
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl... 27 2.0
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen... 27 3.5
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 26 4.6
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 26 4.6
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340... 25 8.1
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 25 8.1
>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
Length = 92
Score = 118 bits (284), Expect = 8e-28
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = +2
Query: 26 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 205
MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK +KR VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 206 KRTVAGGAXVFSTTAA 253
+ AGGA +T +A
Sbjct: 61 GKVKAGGAYTMNTASA 76
>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
similar to putative 60S ribosomal protein L37a
GB:AAD28753 [Gossypium hirsutum]
Length = 92
Score = 111 bits (267), Expect = 9e-26
Identities = 49/76 (64%), Positives = 56/76 (73%)
Frame = +2
Query: 26 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 205
M KRTKK I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR VGIW CK C
Sbjct: 1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60
Query: 206 KRTVAGGAXVFSTTAA 253
+ AGGA +T +A
Sbjct: 61 GKVKAGGAYTMNTASA 76
>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 545
Score = 30.3 bits (65), Expect = 0.28
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 10 GEVYQNGQTYQKGWNYW 60
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 428
Score = 30.3 bits (65), Expect = 0.28
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 10 GEVYQNGQTYQKGWNYW 60
G Y +G+TYQ W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196
>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 516
Score = 30.3 bits (65), Expect = 0.28
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 10 GEVYQNGQTYQKGWNYW 60
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At4g28730.1 68417.m04109 glutaredoxin family protein contains
glutaredoxin domain, Pfam:PF00462
Length = 174
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 56 TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 151
+ +G+R S+RK V + V ++K CS+C
Sbjct: 62 SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93
>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
family protein contains Pfam profile PF00107:
oxidoreductase, zinc-binding dehydrogenase family
Length = 386
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 220 RRSXGILHYCCLSCRSAVRRLREVK 294
RR +LHYC L+ +S V ++ V+
Sbjct: 16 RRETPLLHYCSLTTKSPVYQINRVR 40
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 225 PPATVLLHRLQDQMPTQERF 166
PP TVL+ +LQ+ + + ERF
Sbjct: 804 PPMTVLIQKLQNALSSLERF 823
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 225 PPATVLLHRLQDQMPTQERF 166
PP TVL+ +LQ+ + + ERF
Sbjct: 877 PPMTVLIQKLQNALSSLERF 896
>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
Protein of unknown function (DUF740)
Length = 521
Score = 25.4 bits (53), Expect = 8.1
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +1
Query: 22 QNGQTYQKGWNYW 60
++G+ + KGWN+W
Sbjct: 347 KSGKNWSKGWNFW 359
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 179 VGIWSCKRCKRTVAG--GAXVFSTTAAY 256
+GIWSC C++ + G GA + + + Y
Sbjct: 163 LGIWSCGVCRKEIDGDYGAYICNICSGY 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,234,311
Number of Sequences: 28952
Number of extensions: 145047
Number of successful extensions: 410
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -