Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0306
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 113 7e-26
07_01_0578 + 4295386-4296489,4297394-4297507 113 9e-26
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.037
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.11
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.15
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.26
05_03_0163 + 9070781-9071320 31 0.45
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 31 0.60
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 30 1.0
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 1.4
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 1.8
10_07_0029 + 12031711-12032464,12044289-12044386 28 4.2
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 4.2
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 28 5.6
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 28 5.6
07_01_0469 - 3552409-3553368 28 5.6
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 5.6
04_01_0244 - 3194141-3195091,3195301-3195312 28 5.6
03_01_0147 - 1170481-1171260,1171332-1171511 28 5.6
03_01_0092 - 731069-731434,731569-733080 28 5.6
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 7.4
04_01_0588 + 7657510-7657992,7658397-7658843 27 7.4
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 27 7.4
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 7.4
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 27 7.4
10_05_0107 - 9223680-9223980,9224340-9224715,9225722-9225817,922... 27 9.8
09_06_0153 - 21243108-21245660 27 9.8
07_03_1636 + 28290642-28291574 27 9.8
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 27 9.8
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 27 9.8
02_02_0147 - 7176478-7176832,7177006-7177334 27 9.8
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 27 9.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 113 bits (273), Expect = 7e-26
Identities = 48/52 (92%), Positives = 50/52 (96%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 54.4 bits (125), Expect = 6e-08
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 458 LLLTGVPALVQARGHIIKXFPSFP 529
L T VP+LV ARGH I+ P FP
Sbjct: 131 LAATAVPSLVLARGHRIEGVPEFP 154
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 113 bits (272), Expect = 9e-26
Identities = 47/52 (90%), Positives = 50/52 (96%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 65 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Frame = +2
Query: 86 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AG
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAG 63
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 458 LLLTGVPALVQARGHIIKXFPSFP 529
L T VP+LV ARGH I+ P P
Sbjct: 132 LAATSVPSLVLARGHRIETVPELP 155
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.037
Identities = 21/47 (44%), Positives = 23/47 (48%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 375
RE GG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGG----GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 371 PPRHMLPKAP*PDLWVPPP 315
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.26
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>05_03_0163 + 9070781-9071320
Length = 179
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQG 345
R GGWSQ AE WG G ++ GGG RS +G
Sbjct: 15 RGAGGWSQR-AEGWGGGGGRSQRAEGGGGGGGRSRRG 50
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 220 EAALLREQGGWSQTSAESWGTGRAV 294
EAALLR G W++ + + WG G V
Sbjct: 367 EAALLRAAGDWARGAGQRWGVGDVV 391
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +1
Query: 211 QELEAALLREQGGWSQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 375
+++ A ++GG S S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 376 MFAPTKP-WR 402
M P P WR
Sbjct: 123 MLRPGFPKWR 132
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 376 YVHHDTCYRRHPDRTYG 326
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 375
R+ GG S S G+GR R RG R G G GGR
Sbjct: 1176 RQGGGRSGYSGRGGGSGRGGGGYQRDRGSQGSRGGYGGGSRFQDGGR 1222
>10_07_0130 + 13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 220 EAALLREQGG-WSQTSAE-SWGTGRAVARIPRVRGGGTHRSG 339
EAAL E GG W+ + E G RA A PR G SG
Sbjct: 916 EAALSPESGGRWAGPAVELGGGDARAAAAEPRGHGNNLRHSG 957
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = +1
Query: 127 AGCSQAPPVRIQGAHTSGPGQ*CSRFYVQELEAALLREQGGWSQTSAESWGTGRAVARIP 306
AG + PP R G TSG G S + V+ + +S + + S+G G
Sbjct: 103 AGGGETPPARRGGGRTSGGGG--SSYSVEHSPSP--SPLHPYSDSGSGSYGGGLVANSRA 158
Query: 307 RVRGGGTHRSGQGAFGNMCR 366
+ GGG R + N+ R
Sbjct: 159 KGGGGGAPRGNETVIPNIIR 178
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 376 YVHHDTCYRRHPDRTYG 326
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRFHPRRASG 110
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 352 RRHPDRTYGYHHHGHAEFGQQHVRYPMI 269
R H D +G+HHH H G H P +
Sbjct: 68 RAHGDHHHGHHHHHHGH-GHSHHHGPEV 94
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 376 YVHHDTCYRRHPDRTYG 326
Y+ HDT YR HP R G
Sbjct: 98 YIFHDTAYRFHPRRANG 114
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 43 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 368 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 276
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 158 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 66
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = +1
Query: 223 AALLREQGGWSQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGNMCRGGRMFAPTK 393
+ +L W ++S+ W G R+ + GGG R G P
Sbjct: 214 SGVLPSSSEW-RSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGLGWASSWFGRPNL 272
Query: 394 PWRRW 408
PWRRW
Sbjct: 273 PWRRW 277
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAVARIPRVRGGGT--HRSGQGAF 351
R + GW A+ + + R P +GGG R GQG F
Sbjct: 1121 RREQGWDAHQAQVGAQHQNLPRFPPQQGGGNIGERQGQGQF 1161
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 323 PPPRTRGIRATARPVPHDSA-LVWDQPP 243
PPPRTR + PVP SA + QPP
Sbjct: 166 PPPRTRQVNPAPPPVPSPSAPPLPPQPP 193
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +1
Query: 166 AHTSGPGQ*CSRFYVQELEAALLREQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQG 345
A T+G G YV + + ALL E + E GRA RI RG G GQG
Sbjct: 35 AETAGSGD--DEEYVSDPDDALLPEMRRREASDDEGSEEGRA--RIGSDRGDGDDGDGQG 90
Query: 346 A 348
A
Sbjct: 91 A 91
>10_05_0107 -
9223680-9223980,9224340-9224715,9225722-9225817,
9225870-9225930
Length = 277
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 238 EQGGWSQTSAESWGTGRAVARI-PRVRGGGTH-RSGQ 342
E G W S S TGR AR P + GGG H R GQ
Sbjct: 84 ELGRWCTASVSS-STGRGGARRGPALEGGGGHQRQGQ 119
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 135 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 13
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>07_03_1636 + 28290642-28291574
Length = 310
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 371 PPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVWDQPP 243
PP + AP +VPPP +R + P P + L PP
Sbjct: 154 PPPQLFETAPPSPPYVPPPPDAYLRKPSPPSPPPAKLSPPPPP 196
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 208 VQELEAALLREQGGWSQTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGRMFA 384
+++L A RE + +A + T +A + R GG HR G+G G GG
Sbjct: 473 IKQLLAGGQRELVATGEAAATAAATAKATPPLARRTADGGAHR-GRGGGGAEADGGARRG 531
Query: 385 PTKPWRR 405
WRR
Sbjct: 532 RGGGWRR 538
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/71 (26%), Positives = 27/71 (38%)
Frame = +2
Query: 71 SLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 250
S + PL + S KS + ++ LP V P + +HV K S P C S+
Sbjct: 498 SRDMVPPLPPLPSMKSPSESWLSRALPSVSSNPPATSFLG-IHVQHKKQSPPPRCSSRAP 556
Query: 251 GPKPVPNHGVP 283
H P
Sbjct: 557 AKLVADGHARP 567
>02_02_0147 - 7176478-7176832,7177006-7177334
Length = 227
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAV-ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 405
R+ GGWS +A + G G V +R P + G G G R + P + RR
Sbjct: 88 RQHGGWSTETAAAGGCGNGVHSRRPHLAGVVAIGGVGGQLGAERRSRWQWRPVRRKRR 145
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 334 TYGYHH-HGHAEFGQQHVRYPMIRHWFGTSLLAHAVGLPRVLGH 206
T+ +HH HGH FG+ H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAG-GMVNYGGGAPYYAAH 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,669
Number of Sequences: 37544
Number of extensions: 382048
Number of successful extensions: 1614
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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