Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0306
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 118 2e-27
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 37 0.009
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 37 0.012
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.087
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 1.9
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 2.5
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.5
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17) 29 3.3
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 27 7.6
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 27 7.6
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 27 7.6
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 118 bits (285), Expect = 2e-27
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 58 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWH 109
Score = 67.3 bits (157), Expect = 8e-12
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = +2
Query: 83 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AG
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAG 56
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +1
Query: 244 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 405
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 14 GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 244 GGWSQTSAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 399
GG + WG G + R P GGG R G +G M GG P + W
Sbjct: 54 GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +1
Query: 244 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 405
GGW Q WG G+ + R GGG R G +G M GG P W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 257
HH CY H Y Y+ H H + + H YP RH++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 329 WVPPPRTRGIRATARPVPHD 270
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 334 TYGYHHHGHAEFGQQHVRYPMI-RHWFGTSLLAHAVGLP-RVLGHRNVN 194
+Y +HHHG E Q V I R W L +H P RV+G ++
Sbjct: 21 SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 278
HH RH R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 211 QELEAALLREQGGWSQTSAESWGTGRA----VARIPR-VRGGGTHRS 336
+ E+AL E+ W+Q AES T RA +AR+ R GT RS
Sbjct: 3432 EHAESALAAERAQWAQEKAESQNTIRAANEEIARLKEDARKAGTERS 3478
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 379 TYVHHDTCYRRHPDRTYGYHHHGHA 305
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 375
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 355 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 263
Y +HP T+ YHH H + ++ ++P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 355 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 263
Y +HP T+ YH H + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
Length = 278
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 361 TCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGTSLL 242
TC+ HP + Y H+ H F Q H + RH+ TS L
Sbjct: 52 TCFPYHPHYHHHYRHNDH-YFHQDH----LYRHYLSTSAL 86
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 150 GRGLAAPCTVSLFSEYTDTKGRATDRLI 67
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 374 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHD 270
RPP H + P PD WVP P R +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHH 314
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 376 YVHHDTCYRRHPDRTYGYHHHGH 308
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,842
Number of Sequences: 59808
Number of extensions: 369613
Number of successful extensions: 1166
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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