Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0306
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   108   3e-24
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   8.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  108 bits (259), Expect = 3e-24
 Identities = 47/52 (90%), Positives = 48/52 (92%)
 Frame = +1

Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +2

Query: 83  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 467 TGVPALVQARGHIIKXFPSFP 529
           +G+PAL+QARGH+I      P
Sbjct: 130 SGIPALLQARGHVIDQVAEVP 150


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -1

Query: 337  RTYGYHHHGHAEFGQQHVRYPMIRHWFGTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLE 158
            R  GY+      +     RYP +R    + L + A  LPR++  R+ + +   R + R  
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433

Query: 157  YERE 146
            Y  E
Sbjct: 1434 YSNE 1437


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 131 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 30
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 370 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 287
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 371 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 273
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 371 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 273
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +2

Query: 68  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 241
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,321
Number of Sequences: 27780
Number of extensions: 263850
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)