Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0306
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 111 3e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 111 3e-25
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.50
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 30 1.2
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.5
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 2.0
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 2.0
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 29 2.7
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 3.5
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 28 3.5
At1g76010.1 68414.m08825 expressed protein 27 6.2
At1g74290.1 68414.m08603 esterase/lipase/thioesterase family pro... 27 6.2
At1g74280.1 68414.m08602 hydrolase, alpha/beta fold family prote... 27 6.2
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 27 6.2
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 27 6.2
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 27 8.2
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 8.2
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P... 27 8.2
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 27 8.2
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 8.2
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain... 27 8.2
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 111 bits (267), Expect = 3e-25
Identities = 47/52 (90%), Positives = 49/52 (94%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 250
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 251 G 253
G
Sbjct: 65 G 65
Score = 30.3 bits (65), Expect = 0.88
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 467 TGVPALVQARGHIIKXFPSFP 529
T VPALV ARGH I+ P P
Sbjct: 137 TAVPALVMARGHKIENVPEMP 157
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 111 bits (267), Expect = 3e-25
Identities = 47/52 (90%), Positives = 49/52 (94%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117
Score = 64.5 bits (150), Expect = 4e-11
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +2
Query: 68 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 241
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 242 KEAG 253
K+AG
Sbjct: 61 KKAG 64
Score = 30.3 bits (65), Expect = 0.88
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 467 TGVPALVQARGHIIKXFPSFP 529
T VPALV ARGH I+ P P
Sbjct: 136 TAVPALVMARGHKIENVPEMP 156
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.50
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYGYHHHGHAEF 299
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 89 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGPKPVP 268
P V VY + P+ + K P P V+ V + K + C K+ P PVP
Sbjct: 272 PPVPVYKPPPKIEHPPPVPVHKLPKKPCPPKKVDPPPVPVHKPPTKKPCPPKKVDPPPVP 331
Query: 269 NH-GVPDVLLP 298
H P +++P
Sbjct: 332 VHKPPPKIVIP 342
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 92 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 366 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 464
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 366 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 464
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 217 LEAALLREQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 387
+ AL+R + G ++ +AE + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMG-AKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 388 TKPW 399
W
Sbjct: 135 ISKW 138
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 143 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 143 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 371 PPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVWDQPPC 240
PP ++ P P P ++ PPP + P P ++ PPC
Sbjct: 420 PPPYVYPPPPPPYVYPPPPSPPYVYPP--PPPSPQPYMYPSPPC 461
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 241 QGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 369
QG + G GR R R RGGG R G G F N G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 238 EQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 372
E GGW + + G GR R R RG G + + GG
Sbjct: 178 EDGGWEREQSYGRGRGRGRGRSSRGRGRGGYNGPPNEYDAPQDGG 222
>At1g74290.1 68414.m08603 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
esterase/lipase/thioesterase family
Length = 371
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 155 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGPKPVPNHGVPDV 289
VF + PDLV ++ V M R YC S + P P V D+
Sbjct: 100 VFATLLSPDLVEELGVYMVSFDRPGYCES-DPHPSRTPRSLVSDI 143
>At1g74280.1 68414.m08602 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 372
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 155 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGPKPVPNHGVPDV 289
VF + PDLV ++ V M R YC S + P P V D+
Sbjct: 100 VFATLLSPDLVEELGVYMVSFDRPGYCES-DPHPSRTPRSLVSDI 143
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 241 QGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 375
+G S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 241 QGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 375
+G S+ + G GR R +GGG H+ G+G +GGR
Sbjct: 15 EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 210 PRTRGSPTA*ARRLVPNQCRIMGYRTCCCPNSACPWWW 323
P T SP P + YR P S PWWW
Sbjct: 102 PPTPISPPPKVHHPAPQAQKAFYYRQSPPPPSGQPWWW 139
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 67 NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
N +I +PT S+ G S V + GAHT G + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207
>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
(PTPA) family protein similar to Protein phosphatase 2A,
regulatory subunit B' (PP2A, subunit B', PR53 isoform)
(Phosphotyrosyl phosphatase activator) (PTPA)
(Swiss-Prot:Q28717) [Oryctolagus cuniculus]
Length = 392
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 353 PKAP*PDLWVPPPRTRGIRATARPVPHDSALV 258
P A P++ PPP R IRA A +PH+S +
Sbjct: 46 PLASFPEM-SPPPNYRPIRAPAINLPHNSQAI 76
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -3
Query: 395 GFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVWDQP 246
GFV + P H +P L PPP++ + + P P S+ +P
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 277 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 372
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to CLATHRIN
COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
SWISSPROT:Q61548
Length = 599
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 131 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 33
PAPS ++ N + +P+D F E PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,964
Number of Sequences: 28952
Number of extensions: 256669
Number of successful extensions: 923
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -