Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0305
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10320.1 68416.m01238 expressed protein contains Pfam domain,...    31   0.39 
At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putati...    29   2.1  
At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putati...    29   2.1  
At5g61060.1 68418.m07662 histone deacetylase family protein simi...    29   2.7  
At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein co...    27   6.3  

>At3g10320.1 68416.m01238 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 494

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 216 KQVDIDSNGIRLLDKYSFLCEMYDEDADEIKD---LTLNYFPFDNSVQIIDAK 365
           K++ +D NG ++L + S L E YD+D   +KD   +T   + F   + + D K
Sbjct: 421 KKLGLDYNGYKILPRESSLYEKYDKDDPILKDPNSITKKGWQFTKGIYLNDQK 473


>At5g64300.1 68418.m08077 riboflavin biosynthesis protein, putative
           (RIBA) similar to SP|P47924 {Arabidopsis thaliana},
           SP|P51695 Riboflavin biosynthesis protein ribA
           [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
           3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
           synthase)] {Bacillus amyloliquefaciens}; contains Pfam
           profiles PF00925: GTP cyclohydrolase II, PF00926:
           3,4-dihydroxy-2-butanone 4-phosphate synthase
          Length = 384

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 213 HKQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQII 356
           H +  +D   +  LD    LCE+ D+D    +   L  F  +N+++++
Sbjct: 111 HTEASVDLTVLAGLDPVGVLCEIVDDDGSMARLPKLREFAAENNLKVV 158


>At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putative
           similar to SP|P50855 Riboflavin biosynthesis protein
           ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
           3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
           synthase)] {Actinobacillus pleuropneumoniae}; contains
           Pfam profiles PF00925: GTP cyclohydrolase II, PF00926:
           3,4-dihydroxy-2-butanone 4-phosphate synthase
          Length = 476

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 213 HKQVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQII 356
           H +  +D   +  L+  S LCE+ D+D    +   L  F  +N++++I
Sbjct: 248 HTEASVDLTVLAGLEPVSVLCEIVDDDGSMARLPRLRQFAQENNLKLI 295


>At5g61060.1 68418.m07662 histone deacetylase family protein similar
           to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
           contains Pfam profile PF00850: Histone deacetylase
           family
          Length = 660

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 37  HIYIIHNREFVSLMRRLCANKTDYKNKRI 123
           H+ ++H ++ V+L++ +   + DY+  RI
Sbjct: 81  HLQLVHTKDHVNLVKSISTKQKDYRRNRI 109


>At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit; tomato leucine zipper-containing protein,
           Lycopersicon esculentum, PIR:S21495
          Length = 636

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 270 LCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRV 392
           LC++ D  A+  KD++L+Y    N++QII    G   L+ +
Sbjct: 445 LCKL-DTKAEHYKDVSLSYLFLANNLQIIIETVGSTPLRNL 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,913,416
Number of Sequences: 28952
Number of extensions: 170066
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)