Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0304
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 32 0.26
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 31 0.46
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 31 0.80
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 31 0.80
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 30 1.4
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 29 2.4
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 28 4.3
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 28 5.6
12_01_0651 - 5507935-5509638 27 7.5
04_01_0360 - 4720997-4721812 27 7.5
02_05_0427 + 28893726-28893930,28895164-28895210 27 7.5
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 27 9.9
04_04_0878 + 29039110-29039366,29039634-29039822,29039907-290400... 27 9.9
03_02_0169 - 6099621-6099663,6099794-6099915,6100020-6100115,610... 27 9.9
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530... 27 9.9
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952... 27 9.9
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 159 ERLPAVARVVGSLHVPPLQMRDQRREILHSCCGCRKPKIPENAL-ECHEYIEDENV 323
ER + + + P +R R+ + S G + EN L +C+EY++ EN+
Sbjct: 173 ERERDMINIYAQMFTQPFSLRQARKVLFASKLGLAQSDFSENMLKQCNEYVKQENI 228
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV + +++ +PW W D+ T RC ++D KY
Sbjct: 288 QLCVFQVAKESKKPWIWW-DYVTDFHIRCPMKDKKY 322
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 30.7 bits (66), Expect = 0.80
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q CV + + + +PW W D+ ++ RC +++ KY
Sbjct: 31 QLCVHRVANETGRPWAWW-DYVMDYKIRCSMKEKKY 65
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 451 GSFCWPFHGLSGNSSPGCPLVCTIL 377
GSF WPF G +S GC ++C +L
Sbjct: 435 GSFFWPF---VGGTSSGCFMICIVL 456
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 94 LVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEI 225
+ +PA +A S AC + Q + E S TCH RC+I
Sbjct: 266 MTIPAEAASSSSAFACAVAALAEQQQMYGEASSTATCHTSRCDI 309
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 130 YQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
+Q CV K + + +PW W D+ RC +++ KY
Sbjct: 330 HQICVFKAANESGKPWL-WWDYVHDFSIRCPMKEKKY 365
>12_01_0651 - 5507935-5509638
Length = 567
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 454 FGSFCWPFHGLSGNSSPGCPLVCTILSPF 368
F + F GL + + GC L CT+ PF
Sbjct: 48 FNILRYSFDGLHDDEARGCFLACTLFPPF 76
>04_01_0360 - 4720997-4721812
Length = 271
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 308 RR*ECRIPHVLCAIALRRRSKWRENSANQRAAWRTV 415
RR + R+ V LRRR +WRE A R TV
Sbjct: 104 RRKQRRLETVTRRQRLRRRRQWREGKAEARVGEETV 139
>02_05_0427 + 28893726-28893930,28895164-28895210
Length = 83
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 162 RLPAVARVVGS-----LHVPPLQMRDQRREILHSCCGCRKPKIP 278
++P +A V+GS PPLQ +++ ++ S CG + KIP
Sbjct: 33 QIPTIASVIGSESSPPSSQPPLQRGGEKQHVMASSCGGER-KIP 75
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 133 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 240
Q C+ K + ++PW W D+ RC +++ KY
Sbjct: 282 QICLFKVGNETHKPW-VWWDYVHDFSIRCPMKEKKY 316
>04_04_0878 +
29039110-29039366,29039634-29039822,29039907-29040044,
29040786-29041011,29041686-29041878,29041963-29042123
Length = 387
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 351 RCVVEVNGERIVQTRGQPGELFPDKPWKGQQNEPNPAXVGMSGIQQTPVXGEPRV 515
R + VN +++ R +FP+K + +P PA + G Q V G P V
Sbjct: 51 RSLSPVNSRSLLEGRDVRDAVFPNKLFDKAFGQPLPAPLVGDGKMQMDVEGAPLV 105
>03_02_0169 -
6099621-6099663,6099794-6099915,6100020-6100115,
6100211-6100327,6100431-6100502,6100627-6100790,
6100878-6100978,6101083-6101179,6101298-6101433,
6101540-6101596,6101723-6101808,6102097-6102303,
6103401-6103522,6103625-6103869
Length = 554
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 25 VTMAGVLRIQHGKQLGALFMLCCLVLPALS 114
VT+A L +HG + A F +CC + A S
Sbjct: 365 VTLASSLAARHGPTIMAAFQICCQLWLATS 394
>02_01_0708 -
5298456-5298664,5299615-5299768,5300209-5300301,
5300644-5300847,5302034-5302174,5302723-5302827,
5303485-5303874,5304573-5304713,5304756-5304845,
5305779-5306288
Length = 678
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 159 ERLPAVARVVGSLHVPPLQMRDQRREILHSCCGCRKPKIPENAL 290
+ LPAVA S PPL +R +R H K PE L
Sbjct: 15 QTLPAVAAASPSPSPPPLLLRPRREAFEHGLLPIPKLIFPEGTL 58
>01_06_0919 -
32993752-32993856,32994383-32994592,32994666-32995220,
32995705-32995926,32996381-32996511,32997456-32998353,
32998453-32998530,32998612-32998683,32998728-32998763,
32999413-33000353,33000531-33000659,33000751-33000894,
33000994-33001060,33002434-33002502,33003144-33003278
Length = 1263
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = -3
Query: 357 RNAIAHSTWGIRHSHLRCIRGIPVRFPV--------FLVFDIHSSYEVF 235
R +A + WG+R C+ G P++ V FL +D ++ Y+ F
Sbjct: 776 RTQVARACWGLRAKRRWCLSGTPIQNAVEDLYSYFRFLRYDPYAEYKKF 824
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,500
Number of Sequences: 37544
Number of extensions: 366291
Number of successful extensions: 1099
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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