Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0304
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1) 29 3.3
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 27 7.6
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_9743| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_40073| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6) 27 7.6
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2) 27 7.6
>SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 252 CGCRKPKIPENALECHEYIEDENVEFPTCCARLRC 356
C +KP +P++ HE + + C R RC
Sbjct: 28 CLAQKPGVPQDTRHSHEPLPQRKISLIVCSTRTRC 62
>SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 119 SADRAGKTRQHNINNAPNCFPCCIL 45
SA+ K R H+ N +CF CCIL
Sbjct: 279 SANDKKKKRLHDSANQKSCFTCCIL 303
>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
Length = 1188
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 270 KIPENALECHEYIEDENVEFPT 335
++ E+ LEC EYI ++N EF T
Sbjct: 513 EMSESILECFEYIPEKNTEFMT 534
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 225 QRREILHSCCGCRKPKIPENALECHEYIEDENVEFPTCC 341
QRRE + G K E H+ D NV F CC
Sbjct: 731 QRREGFKTAEGSEARKQDERRFRLHQSSSDSNVYFSQCC 769
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 399 QPGELF-PDKPWKGQQNEPNPAXVGMSGIQQ 488
QP ELF P+ P K QQN+P P ++Q
Sbjct: 121 QPVELFAPNSPPKPQQNQPKPPKPSNKTVKQ 151
>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1593
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 214 RCEIRDGKYFIAAVDVENQKYRKTHWNATNTSK 312
+C I G+Y+I + Q++R WNA +T++
Sbjct: 497 QCNIIHGRYYIFHHKKDVQRHRYLVWNANDTTR 529
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 335 VLCAIALRRRSKWRENSANQRAAWRTVPR*TMEGPTKR 448
V C R RE RA WR+VP + PTKR
Sbjct: 3168 VACLQVFARVLNAREIQQRMRACWRSVPTKSPVVPTKR 3205
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 248 LLWMSKTKNTGKRTGM--PRIHRR*ECRIPHVLCAIALRRRSKWRENS 385
L W + KN GKR G+ P + R C + +A R R WREN+
Sbjct: 17 LSWNPEYKNPGKRNGIRNPEPYWR-SCH-EAMTYPLATRHRQIWRENA 62
>SB_9743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 443 KRAKSCXCRNERHPADTGXWRAQGQASPGIFNSRG 547
KR N + AD G + +G+A G+FN +G
Sbjct: 61 KRVADKGLFNNKGVADKGLFNNKGEADKGLFNDKG 95
>SB_40073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 487 CWMPLIPTXAGFGSFCWPFHGLSGNSSPGCPLV 389
CW A +CWP S + SPG PLV
Sbjct: 26 CWPKGREFLAKRARYCWPKDIASNSCSPGDPLV 58
>SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6)
Length = 211
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 121 DVSYQACVDKYSRKGYQPWQEWSDHYT 201
D SY D+ GY WQ W+D +T
Sbjct: 144 DGSYPKPHDEALEAGYDSWQAWADAWT 170
>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 272 NTGKRTGMPRIHRR*ECRIPHVLCAIA 352
+ GK G IH R +CR P LC +A
Sbjct: 373 SNGKLMGTIDIHSRRKCRNPRSLCVVA 399
>SB_23919| Best HMM Match : Nanovirus_C8 (HMM E-Value=7.2)
Length = 308
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 216 MRDQRREILHSCCGCRKPKIPENAL 290
MR++R I+ +C C P P+N +
Sbjct: 1 MRERRENIVRACENCETPSSPKNTM 25
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,874
Number of Sequences: 59808
Number of extensions: 413115
Number of successful extensions: 1215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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