Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0304
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   5.1  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative pota...    27   6.7  
AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 121 DVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAVD--VENQKYRKTHWN 294
           +  Y ACV    R  YQ  + W+D    + YRC   DG+     ++  + + K R+    
Sbjct: 103 EFGYSACVGTDGRT-YQKGETWTDAKNTYYYRCR-DDGRVVKTTIEGCIAHDKQRRVPLG 160

Query: 295 ATN 303
            T+
Sbjct: 161 QTD 163


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 438 QQNEPNPAXVGMSGIQQTPVXGEPRVRRLLEYLT 539
           Q+  P PA V    + Q PV  EPR+   +E +T
Sbjct: 18  QEPPPEPAPVVEETLPQAPVVAEPRILENVETMT 51


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
           S ++SP   +  +  +P TSTT  + +    +ST SSS+ S  SS  S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 421 SGNSSPGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSWHSSAFS 278
           S ++SP   +  +  +P TSTT  + +    +ST SSS+ S  SS  S
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQS 527


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 371 IYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFW 267
           IYF D  Q    R  +   IF+ F+A  C F   W
Sbjct: 140 IYFYDIFQDSLLRNSYYSCIFNTFLAHVCDFASVW 174


>Z70266-1|CAB61045.1|  364|Caenorhabditis elegans Hypothetical
           protein C40C9.1 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
           L+ R  RR I  + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344


>AF083646-1|AAC32857.1|  364|Caenorhabditis elegans putative
           potassium channel subunitn2P20 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 210 LQMRDQRREILHS-CCGCRKPKIPEN 284
           L+ R  RR I  + CCGC KP+ P +
Sbjct: 319 LRRRSTRRSIQDTVCCGCFKPRPPRH 344


>AF040657-2|AAB95050.2|  312|Caenorhabditis elegans Hypothetical
           protein T20H9.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 380 SLSIYFDDATQSRTARGEFDILIFDVFVAFQCVFRYFWFSTS 255
           SLS+ FD  T+    +   D++  D F   +  F   WFST+
Sbjct: 219 SLSVEFDFFTEENAIKIRDDLMKRDTFRRCEVWFNSSWFSTA 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,665
Number of Sequences: 27780
Number of extensions: 299818
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)