Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0304
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   8.2  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 414 FPDKPWKGQQNEPN 455
           F D+P  G+ N+PN
Sbjct: 234 FLDEPLSGETNDPN 247


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 414 FPDKPWKGQQNEPN 455
           F D+P  G+ N+PN
Sbjct: 234 FLDEPLSGETNDPN 247


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 417 PDKPWKGQQNEPNPAXVGMSGIQQTPV 497
           P+K WK      N A  G  G  QT V
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSV 91


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 417 PDKPWKGQQNEPNPAXVGMSGIQQTPV 497
           P+K WK      N A  G  G  QT V
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSV 91


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 417 PDKPWKGQQNEPNPAXVGMSGIQQTPV 497
           P+K WK      N A  G  G  QT V
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSV 91


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 417 PDKPWKGQQNEPNPAXVGMSGIQQTPV 497
           P+K WK      N A  G  G  QT V
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSV 91


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 417 PDKPWKGQQNEPNPAXVGMSGIQQTPV 497
           P+K WK      N A  G  G  QT V
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSV 91


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 417 PDKPWKGQQNEPNPAXVGMSGIQQTPV 497
           P+K WK      N A  G  G  QT V
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSV 91


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 311 R*ECRIPHVLCAIALRRRSKWRE 379
           R EC +P   CA+  + +   +E
Sbjct: 50  RPECMVPEYQCAVKRKEKKAQKE 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,568
Number of Sequences: 438
Number of extensions: 3982
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)