Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0303
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.085
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.11 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    30   0.26 
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    29   0.46 
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    29   0.60 
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    28   0.80 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   1.1  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    27   2.4  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   4.2  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   4.2  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   7.4  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   7.4  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   7.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   7.4  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   9.8  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   9.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.8  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 207 VQEILKDMASQGDYASKHQRWPKPPELSPIYLPVSPVMP 323
           +Q IL+ +A +GD     +  PKPP +  I  P+ P  P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 413
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 90  NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASKHQ 263
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD +S+H+
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 210 QEILKDMASQGDYASKHQRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 386
           ++I K++A+          WP PP +    L V+     QP ++ +  T   S   T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464

Query: 387 SDNLSVPS 410
           S ++  PS
Sbjct: 465 SQSMQSPS 472


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +3

Query: 159 AWDYVDDTDKSIAILNVQEILKDMASQGDYASKHQRWPKPPELSPIYLPVSPVMPVQPLT 338
           A++   DT  +   LN  E +  M +QG   S           SP +   +PV P QPL 
Sbjct: 242 AYEVTGDTRAASPTLNPFEQMMAMTNQGMSVSPGVETTS----SPFF--TAPVEPNQPLQ 295

Query: 339 SLTLTQTASGPETSPASDNLSVPSS 413
            L  + T   P +  +   L++PS+
Sbjct: 296 PLRPSMTGPVPSSMGSEATLNMPST 320


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 278 RFGPPLMLTCIIALAGHVLQDLLNVEDGDAFVSVIDVVP 162
           RFGPPLM T  + L G V+  +++   G    S+ID  P
Sbjct: 286 RFGPPLMKTTSVVL-GLVVGMIISAATGYWDHSIIDAAP 323


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 249 ASKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 389
           A KH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 739 AVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 96  YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAIL-NVQEILKDMASQGDYASKHQRWP 272
           Y+D+E P D +  K S+++ +A+ +V   +   + L N   I  +  + G    +  R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217

Query: 273 KPPE 284
             P+
Sbjct: 218 DDPK 221


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 243 DYASKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 407
           DY+    ++P   + SP+   +  +   +P  S +  QTA    +S  SD  S P
Sbjct: 152 DYSKVSGKYPSVIDNSPVKSKLGALPSARPRLSYSAAQTAPISLSSEGSDYFSRP 206


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 168 YVDDTDKSIAILNVQEILKDMASQGDYASKHQRWPKPPELSPIYLPVS 311
           +V   D ++ +L+   I K          KH   P PP  S   LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 243 DYASKHQRWPKPPELSPIYLPVSPV 317
           +Y++     P+PP+L+P++L V  V
Sbjct: 107 EYSTIEYTLPRPPQLTPVFLFVVDV 131


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +3

Query: 267 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 383
           +P P  +S P Y     +PVSP +PV P +S       + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 493 GWS-DRVSELTRVDDELIDKIQVLSHVSE 410
           G+S DR+ ELTR+D   ++K+  L   S+
Sbjct: 901 GYSVDRIWELTRIDKWFLEKLMGLIRTSQ 929


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 330 AAQASPGIPADRWAIIPAVWATADAYLHNRPGWPCPSR 217
           A    P +  D++A  P + +   A ++    WP PSR
Sbjct: 110 AKYIDPAVYYDKYARSPYIMSPFVACVNTLSAWPAPSR 147


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +3

Query: 51  VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDM 230
           V T+A  A    + + +DNEIP   D   A+S          + D+ I  L+   +L  +
Sbjct: 386 VKTAAELASLQNVTETTDNEIPNSPDFLDAAS----------EEDEHIPSLDSSSLLTPL 435

Query: 231 ASQGDYASKHQRWPKPPELSPIYLPVS 311
           A     A +  ++  P   SP+  P S
Sbjct: 436 ALPNKKAFQPVKFRVPSFSSPLVKPAS 462


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDK 428
           P PP + P  LP  P M +  +         + P T+    N SVP   +  K
Sbjct: 424 PFPPFMMP-GLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPPSSLHK 475


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 284 IIAHLSAGIPGDACAAANVINSYTDGVRSGNFA-GF 388
           +I   +A +  D  A  N+I+ Y   +  GNFA GF
Sbjct: 646 LIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,514
Number of Sequences: 5004
Number of extensions: 44742
Number of successful extensions: 191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)