Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0303
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered cut...    31   0.55 
Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    30   1.3  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    30   1.3  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    30   1.3  
U61953-1|AAC48075.2|  569|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical...    28   3.9  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF039719-3|AAB96756.1|  730|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformb protein.
          Length = 730

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 517 SSTPITTQGWSDRVSELTRVDDELIDKIQ 431
           S+TP T+QG   RV +LT   DE++++I+
Sbjct: 638 SATPATSQGVLSRVHQLTSQGDEVVERIR 666


>Z68760-2|CAA92995.1|  597|Caenorhabditis elegans Hypothetical
           protein F36H1.3 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 222 KDMASQGDYASKHQRWPKPPEL-SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNL 398
           +D  +Q   A  H   P PP + SP  LP +P    +P+T          P +SPA   +
Sbjct: 488 EDDGAQPSSAPVHTP-PAPPAIPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPAPQLV 546

Query: 399 SVPSSDT 419
             P++ T
Sbjct: 547 QKPTTPT 553


>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 463 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 329
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 463 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 329
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 463 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 329
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 463 RVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSG 329
           ++ D L+D+++ + HV+ E  E    A + S  +AV    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 433 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 278
           ++L H+SE+ TE  S  +GE+SG  +     N+ SG      D     GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 433 QVLSHVSEEGTERLS-EAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSG 278
           ++L H+SE+ TE  S  +GE+SG  +     N+ SG      D     GDNSG
Sbjct: 508 EILEHISEKSTEESSGSSGEMSGDGS----DNEASGEGSGEYDASGSSGDNSG 556


>U61953-1|AAC48075.2|  569|Caenorhabditis elegans Hypothetical
           protein R08C7.6 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 279 PELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 407
           P++ P  LPV   +    + S+ +  +    E  P SD+ SVP
Sbjct: 344 PKMPPFVLPVETSVGCDNMNSVAIVHSEIDTEFRPMSDSQSVP 386


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 419
           P  P  +P   PV+   P     T+ T T T +  +T+P +  ++ PS+ T
Sbjct: 669 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 719


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 419
           P  P  +P   PV+   P     T+ T T T +  +T+P +  ++ PS+ T
Sbjct: 725 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 775


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPVQPL-TSLTLTQTASGPETSPASDNLSVPSSDT 419
           P  P  +P   PV+   P     T+ T T T +  +T+P +  ++ PS+ T
Sbjct: 548 PTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTIT 598


>AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical
           protein Y116A8C.4 protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 396 DCLKPAKFPDLTPSV*ELMTLAAAQASPG 310
           D +KPA   DL PSV + M L  A  SPG
Sbjct: 286 DKMKPAVLDDLVPSV-DFMGLVKAMISPG 313


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 288 SPIYLPVSPVMPVQPLTSLTLTQTAS----GPETSPASDNLSVPSSDT 419
           S IYLP      V+P +S+ L+ T S     P+T PAS +++  ++ T
Sbjct: 502 SSIYLPQPAYPEVKPNSSVILSSTQSQNNTSPQTIPASASVTNSATST 549


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 324 VQPLTSLTLTQTASGPETSPASDNLSVPSSDTW 422
           V P+T+ T     SGP     S N  + SSD W
Sbjct: 846 VTPVTTTTTNMRESGPLLHENSHNQLLSSSDNW 878


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 324 VQPLTSLTLTQTASGPETSPASDNLSVPSSDTW 422
           V P+T+ T     SGP     S N  + SSD W
Sbjct: 846 VTPVTTTTTNMRESGPLLHENSHNQLLSSSDNW 878


>U97403-6|AAB52471.2|  583|Caenorhabditis elegans Hypothetical
           protein T10E9.3 protein.
          Length = 583

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = -3

Query: 538 SGFEVIDSSTPITTQGWSDRVSELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDA 359
           +G +++ SSTPI      ++ + +  VD++    +       +E TE++++A EV+ P A
Sbjct: 449 AGPQLVSSSTPIPVPMTPEK-NHVFEVDNQTTKTVS--EEPKKEETEKINDAPEVTTPRA 505

Query: 358 VCVRVNDVSGC 326
                   +GC
Sbjct: 506 GSHGDGSKNGC 516


>AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical
           protein Y49F6A.1 protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -3

Query: 523 IDSSTPITTQGWSDRVSELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRV 344
           ++S    TTQ WS   + L + + E   KI     V   G   LS+A     P  V +  
Sbjct: 116 LNSQEDFTTQEWSQISNYLRKKNAEFKVKISPNGFVYTNGPNSLSDANRQELPRLVEIAT 175

Query: 343 NDV 335
           ++V
Sbjct: 176 SEV 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,928
Number of Sequences: 27780
Number of extensions: 261662
Number of successful extensions: 1012
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)