Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0302
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   1.9  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   3.4  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    23   4.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    23   5.9  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    23   7.8  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    23   7.8  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 20  SSGTSSIPKFHSSLQDLKQPSLQEPR 97
           S  T+S  K H S   LK+ S  EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 182  WHGVQHDV*NGAQRL*QGAHGL*HGWQGILALEGLVVLGPEDWSEIS 42
            WH   H+    A RL  G H +   +  +  L  ++  GPE   EIS
Sbjct: 1825 WHEQWHEGLEEASRLYFGDHNIEGMFAVLRPLHEMLERGPETLREIS 1871


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 30  PVQYRNFTPVFRT*NNQAFKSQDA 101
           P+QYRN+  VF+  N   F  +++
Sbjct: 37  PLQYRNYWDVFQANNVLLFPEEES 60


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   PYRQ*KSSGTSSIPKFHSSLQDLK 73
           P+R+   S +SS+   HS L+ LK
Sbjct: 149 PFRKRSESTSSSLSGLHSDLRPLK 172


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 134 QGAHGL*HGWQGILALEGLVVL 69
           +  HG+ +GW G  AL  L  +
Sbjct: 111 EAVHGMQNGWMGSKALSQLATI 132


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 181 GTEYSTTCRTARSAYSKARMACDTGGKAS 95
           GT+YST+   + +A +++       GKAS
Sbjct: 420 GTDYSTSQEPSSNANNQSSPTSSINGKAS 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 923,948
Number of Sequences: 5004
Number of extensions: 11933
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)