Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0302
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617...    29   0.52 
05_04_0064 - 17613070-17614749                                         28   0.91 
11_03_0128 - 10437407-10438049,10438097-10438272                       27   2.1  
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726...    26   4.8  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    25   6.4  
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    25   6.4  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    25   6.4  
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867...    25   6.4  
03_05_0946 - 29075600-29076229                                         25   6.4  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    25   8.5  
10_02_0062 - 4814139-4814176,4814571-4815627                           25   8.5  
01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151...    25   8.5  

>06_01_0816 -
           6171189-6171255,6171277-6171441,6172037-6172618,
           6173451-6173761
          Length = 374

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 83  GLVVLGPEDWSEISVLNWSQKIS 15
           G VV GP  W EI +  WSQ+ S
Sbjct: 42  GRVVAGPYCWQEIDIQEWSQQQS 64


>05_04_0064 - 17613070-17614749
          Length = 559

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 217 TAASNGSDSSSRGTEYSTTCRTARSAYSKARMACDTG 107
           +++S+ S  S+R + YS+T  +  S     R  C TG
Sbjct: 37  SSSSSSSSRSARSSNYSSTVSSTESGAGSHRRRCKTG 73


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 193 SSSRGTEYSTTCRTARSAYSKARMACDTGGKAS 95
           S S  +  STTCRT   A   +   C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164


>11_02_0004 +
           7260084-7260967,7261284-7263264,7263359-7263420,
           7263614-7263686
          Length = 999

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 163 SCCTPCHGCYYR 198
           SCCTPC G  Y+
Sbjct: 337 SCCTPCKGFVYK 348


>12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-106310,
            106787-106825,107026-107109,107193-107241,107331-107422,
            107680-107809,107906-107982,108058-109676,110024-110221,
            110287-110825
          Length = 1109

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 38   IPKFHSSLQDLKQPSLQEPR 97
            IP+ H SL    Q SLQ+PR
Sbjct: 1037 IPQNHGSLSSYTQMSLQQPR 1056


>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 190 SSRGTEYSTTCRTARSAYSKARMACDTGG 104
           S RG+ YS TCR+   A + AR  C + G
Sbjct: 37  SLRGSTYSPTCRSPGCALA-ARPTCASSG 64


>11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-110394,
            110491-110603,111080-111118,111319-111402,111486-111534,
            111624-111715,111999-112128,112225-112301,112377-113995,
            114348-114545,114635-115173
          Length = 1166

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 38   IPKFHSSLQDLKQPSLQEPR 97
            IP+ H SL    Q SLQ+PR
Sbjct: 1094 IPQNHGSLSSYTQMSLQQPR 1113


>08_02_0157 -
           13385589-13385675,13386187-13386357,13386572-13386792,
           13390090-13390240,13390682-13390726,13391121-13391330
          Length = 294

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 244 WVSRFTDHLTAASNGSDSSSRGT 176
           WV    + +T ASN  D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185


>03_05_0946 - 29075600-29076229
          Length = 209

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 238 SRFTDHLTA-ASNGSDSSSRGTEYSTTCRTARSAYSKAR 125
           SR  D + A ASN S SSS G   S + + A S+ S+A+
Sbjct: 52  SRKLDAMKAGASNSSSSSSAGAGASGSSQPAGSSSSRAK 90


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 131 GAHGL*HGWQGILALEGLVVLGPEDWSEISVLNWSQKIS 15
           G  G   G    L+L+G+  L  E W+  S L WS+K S
Sbjct: 29  GTSGAAGGVLSYLSLQGVSKL-KERWTRNSALGWSKKRS 66


>10_02_0062 - 4814139-4814176,4814571-4815627
          Length = 364

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 190 SSRGTEYSTTCRTARSAYSKAR 125
           S  G EYST C +  S+ SKAR
Sbjct: 187 SYAGEEYSTICLSFLSSVSKAR 208


>01_01_0179 +
           1517379-1517721,1518092-1518376,1519462-1519699,
           1519796-1519946,1520049-1520446,1520552-1520573
          Length = 478

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 244 WVSRFTDHLTAASNGSDSSSRGTEYSTTCRTARSA 140
           W+S  T   +AAS  + +++ GT+  TT  +A +A
Sbjct: 415 WMSTTTTASSAASTANTATTLGTDTMTTRASASAA 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,321,205
Number of Sequences: 37544
Number of extensions: 88469
Number of successful extensions: 257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)