Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0302
         (250 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12771| Best HMM Match : SET (HMM E-Value=9.1e-18)                   28   1.3  
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          26   5.4  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  26   5.4  
SB_45101| Best HMM Match : AdoMetDC_leader (HMM E-Value=1.6)           25   7.1  
SB_508| Best HMM Match : No HMM Matches (HMM E-Value=.)                25   7.1  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        25   9.4  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 25   9.4  
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)                   25   9.4  

>SB_12771| Best HMM Match : SET (HMM E-Value=9.1e-18)
          Length = 273

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 238 SRFTDHLTAASNGSDSSSRGTEYSTTCRTARSAYSKA 128
           S  +   TA SN + +SSR  E ST+    +  YSKA
Sbjct: 114 SSSSSRATAGSNAAGNSSREAEESTSLYMKQFVYSKA 150


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 223 HLTAASNGSDSSSRGTEYSTTCRTARSAYSKA 128
           H    SN + +SSR T+YS +  +   AY +A
Sbjct: 270 HPVITSNPNAASSRSTDYSMSRYSNNDAYDRA 301


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 235 RFTDHLTAASNGSDSSSRGTEYST 164
           R T++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


>SB_45101| Best HMM Match : AdoMetDC_leader (HMM E-Value=1.6)
          Length = 153

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 217 TAASNGSDSSSRGTEYSTTCRTARSAYSKARMACDTGGKASWLLKA 80
           T +   S+ SS G+  ST  +   +   K+    +TGG   W+  A
Sbjct: 69  TKSGENSNISSSGSSTSTWQQAPDNTSVKSESVVETGGMWGWMSSA 114


>SB_508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 247 IWVSRFTDHLTAASNGSDSSSRGTEYSTTCRTARSAYSKARM 122
           IW      H+T   N + S+ R T YS   R + S  +KA++
Sbjct: 83  IWAFCIDSHVTQRLNCTPSTQRRTCYSRGKRLSYSRRAKAQL 124


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 238  SRFTDHLTAASNGSDSSSRGTEYSTTCR 155
            SR+ D+ + A+ GSD + +  EY T C+
Sbjct: 1276 SRYCDNPSPAAGGSDCAGKSEEY-TYCK 1302


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 235 RFTDHLTAASNGSDSSSRGTEYSTTCRTARSAYSKA 128
           R+TD     S GSD+SSR   YS   R+A  +YS++
Sbjct: 402 RYTDE---ESVGSDASSRSRSYS---RSASRSYSRS 431


>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
          Length = 1055

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 217 TAASNGSDSSS-RGTEYSTTCRTARSAYSKARMACDTGGKA 98
           TA S+ +D+    G        +   +YS    ACDTG KA
Sbjct: 839 TAISSSTDAGHCDGLNAQWNAPSGLCSYSNTIFACDTGNKA 879


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,175,849
Number of Sequences: 59808
Number of extensions: 105064
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)