Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0302
         (250 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    28   0.76 
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    27   1.3  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical...    25   7.1  
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    25   9.4  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    25   9.4  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 247 IWVSRFTDHLTAASNGSDSSSRGTEYSTTCRTARSAYSKARMACDTGGKASWLLKAW 77
           ++  + T   TAA NG   S  G+  +TTC+ +    S    A     K+  L   W
Sbjct: 203 LFTIKVTQSTTAAGNGQGGSGSGSA-TTTCKCSAGDVSATTAASACSEKSGCLKNQW 258


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 250 LIWVSRFTDHLTAASNGSDSSSRGTEYSTTCRTARSAYSKA 128
           +IW S   D   +ASNG    S  T+   T R + S  +KA
Sbjct: 6   IIWGSISIDRAVSASNGEVGISISTDQKVTIRRSSSYSNKA 46


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 220 LTAASNGSDSSSRGTEYSTTCRTARSAYSKAR 125
           ++  S G  SSSRG+ Y  T R+  S  S++R
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSR 135


>AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical
           protein F52C6.14 protein.
          Length = 779

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 169 CTPCHGCYYRC 201
           C  CH C YRC
Sbjct: 566 CEECHACAYRC 576


>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
           resistance related protein2 protein.
          Length = 1525

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 241 VSRFTDHLTAASNGSDSSSRGTEYS 167
           + R   HL+  S+  D+S+R  EYS
Sbjct: 876 LKRLESHLSQESDKEDTSARAIEYS 900


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 2 protein.
          Length = 1525

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 241 VSRFTDHLTAASNGSDSSSRGTEYS 167
           + R   HL+  S+  D+S+R  EYS
Sbjct: 876 LKRLESHLSQESDKEDTSARAIEYS 900


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,138,145
Number of Sequences: 27780
Number of extensions: 67668
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)